X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 293.0
Details 100 mM Bis Tris pH 5.5, 200 mM Ammonium sulfate, 15% PEG-3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.25 α = 90
b = 96.21 β = 90
c = 101.44 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-06-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.9792 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.13 100 99.8 -- 0.207 -- 6.3 -- 28219 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.13 2.19 -- -- 2.074 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.13 69.809 -- 1.2 -- 52319 2710 98.42 -- 0.2503 0.2492 0.2704 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.13 2.1688 -- 133 2541 0.3711 0.4195 -- 95.0
X Ray Diffraction 2.1688 2.2105 -- 175 2588 0.363 0.4024 -- 98.0
X Ray Diffraction 2.2105 2.2556 -- 167 2599 0.3501 0.3621 -- 99.0
X Ray Diffraction 2.2556 2.3047 -- 129 2655 0.3412 0.3563 -- 100.0
X Ray Diffraction 2.3047 2.3583 -- 135 2676 0.3366 0.3675 -- 100.0
X Ray Diffraction 2.3583 2.4173 -- 124 2622 0.3296 0.3495 -- 100.0
X Ray Diffraction 2.4173 2.4826 -- 134 2628 0.3172 0.3698 -- 99.0
X Ray Diffraction 2.4826 2.5557 -- 151 2637 0.3196 0.3068 -- 99.0
X Ray Diffraction 2.5557 2.6382 -- 142 2650 0.3054 0.3658 -- 99.0
X Ray Diffraction 2.6382 2.7325 -- 160 2588 0.3067 0.3506 -- 99.0
X Ray Diffraction 2.7325 2.8419 -- 160 2638 0.3123 0.3694 -- 99.0
X Ray Diffraction 2.8419 2.9712 -- 121 2647 0.2933 0.2868 -- 99.0
X Ray Diffraction 2.9712 3.1279 -- 125 2590 0.2684 0.3376 -- 98.0
X Ray Diffraction 3.1279 3.3238 -- 116 2621 0.2691 0.3132 -- 97.0
X Ray Diffraction 3.3238 3.5804 -- 186 2549 0.2419 0.2236 -- 98.0
X Ray Diffraction 3.5804 3.9407 -- 131 2586 0.2235 0.2902 -- 98.0
X Ray Diffraction 3.9407 4.5109 -- 141 2604 0.1941 0.2222 -- 97.0
X Ray Diffraction 4.5109 5.6828 -- 139 2563 0.2043 0.2086 -- 97.0
X Ray Diffraction 5.6828 69.8463 -- 141 2627 0.2137 0.2019 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.039
f_bond_d 0.002
f_dihedral_angle_d 12.124
f_plane_restr 0.002
f_angle_d 0.394
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3219
Nucleic Acid Atoms 0
Heterogen Atoms 29
Solvent Atoms 74

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
XDS data reduction
Aimless data scaling
SHELX phasing
PHASER phasing