X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 6.6
Temperature 293.0
Details 1.4 M Na-K phosphate pH 6.6

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 169.4 α = 90
b = 63.59 β = 90.6
c = 199.04 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2016-10-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.29 100 98.6 -- 0.091 -- 3.5 -- 95052 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.286 2.33 -- -- 1.08 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.286 57.093 -- 1.34 -- 94878 4806 98.33 -- 0.1984 0.1956 0.2498 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.286 2.312 -- 140 2670 0.3649 0.3954 -- 88.0
X Ray Diffraction 2.312 2.3392 -- 156 2966 0.3493 0.3907 -- 98.0
X Ray Diffraction 2.3392 2.3677 -- 173 3010 0.3163 0.3789 -- 99.0
X Ray Diffraction 2.3677 2.3977 -- 162 2992 0.2923 0.3421 -- 100.0
X Ray Diffraction 2.3977 2.4292 -- 145 3074 0.2701 0.3365 -- 100.0
X Ray Diffraction 2.4292 2.4625 -- 133 3036 0.267 0.3261 -- 100.0
X Ray Diffraction 2.4625 2.4977 -- 172 3023 0.2591 0.2896 -- 100.0
X Ray Diffraction 2.4977 2.5349 -- 183 2999 0.2508 0.3168 -- 100.0
X Ray Diffraction 2.5349 2.5746 -- 144 3048 0.2446 0.3079 -- 100.0
X Ray Diffraction 2.5746 2.6168 -- 141 3022 0.243 0.3081 -- 100.0
X Ray Diffraction 2.6168 2.6619 -- 173 3059 0.2348 0.3164 -- 99.0
X Ray Diffraction 2.6619 2.7103 -- 159 2943 0.2422 0.3174 -- 99.0
X Ray Diffraction 2.7103 2.7624 -- 161 3071 0.239 0.2999 -- 100.0
X Ray Diffraction 2.7624 2.8188 -- 178 3000 0.243 0.2994 -- 100.0
X Ray Diffraction 2.8188 2.8801 -- 183 3008 0.2409 0.3103 -- 100.0
X Ray Diffraction 2.8801 2.9471 -- 155 3023 0.2432 0.3005 -- 100.0
X Ray Diffraction 2.9471 3.0208 -- 174 3074 0.2249 0.2784 -- 100.0
X Ray Diffraction 3.0208 3.1025 -- 147 3005 0.2164 0.3055 -- 99.0
X Ray Diffraction 3.1025 3.1937 -- 154 3062 0.2054 0.2714 -- 99.0
X Ray Diffraction 3.1937 3.2968 -- 179 2951 0.2028 0.2681 -- 99.0
X Ray Diffraction 3.2968 3.4146 -- 129 3059 0.1865 0.2265 -- 99.0
X Ray Diffraction 3.4146 3.5513 -- 156 2978 0.1779 0.2321 -- 97.0
X Ray Diffraction 3.5513 3.7129 -- 152 2970 0.1752 0.2297 -- 97.0
X Ray Diffraction 3.7129 3.9086 -- 162 2959 0.1659 0.2322 -- 97.0
X Ray Diffraction 3.9086 4.1535 -- 166 2982 0.1489 0.1937 -- 98.0
X Ray Diffraction 4.1535 4.474 -- 138 3015 0.1375 0.1809 -- 97.0
X Ray Diffraction 4.474 4.9241 -- 172 2997 0.1378 0.1911 -- 97.0
X Ray Diffraction 4.9241 5.636 -- 191 2998 0.1651 0.2149 -- 98.0
X Ray Diffraction 5.636 7.0987 -- 167 3010 0.198 0.2452 -- 97.0
X Ray Diffraction 7.0987 57.1113 -- 161 3068 0.1732 0.1979 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.008
f_dihedral_angle_d 14.649
f_angle_d 0.873
f_chiral_restr 0.051
f_plane_restr 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12957
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 224

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
XDS data reduction
Aimless data scaling
PHASER phasing