X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 298.0
Details 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 50mM dioxane, 10mM DTT, 9-12% PEG6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 168.55 α = 90
b = 222.28 β = 100.62
c = 193.77 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2016-09-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.4 63.5 100.0 -- -- -- 3.7 -- 83242 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 3.401 63.484 -- 1.35 -- 83193 4034 86.62 -- 0.2037 0.2025 0.2272 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.4009 3.4409 -- 23 573 0.3007 0.2907 -- 18.0
X Ray Diffraction 3.4409 3.4829 -- 50 1044 0.2946 0.3267 -- 33.0
X Ray Diffraction 3.4829 3.5269 -- 84 1355 0.2924 0.2802 -- 44.0
X Ray Diffraction 3.5269 3.5734 -- 74 1655 0.2792 0.2908 -- 52.0
X Ray Diffraction 3.5734 3.6223 -- 103 1825 0.276 0.2746 -- 59.0
X Ray Diffraction 3.6223 3.674 -- 109 2125 0.2683 0.3294 -- 67.0
X Ray Diffraction 3.674 3.7289 -- 113 2338 0.2592 0.2765 -- 75.0
X Ray Diffraction 3.7289 3.7871 -- 139 2532 0.2606 0.2777 -- 81.0
X Ray Diffraction 3.7871 3.8492 -- 138 2774 0.2575 0.2832 -- 88.0
X Ray Diffraction 3.8492 3.9156 -- 144 3015 0.2613 0.2937 -- 95.0
X Ray Diffraction 3.9156 3.9868 -- 166 3150 0.2533 0.2463 -- 100.0
X Ray Diffraction 3.9868 4.0634 -- 155 3118 0.2329 0.2365 -- 100.0
X Ray Diffraction 4.0634 4.1464 -- 136 3160 0.2224 0.2725 -- 100.0
X Ray Diffraction 4.1464 4.2365 -- 159 3186 0.2125 0.2386 -- 100.0
X Ray Diffraction 4.2365 4.335 -- 174 3126 0.1939 0.2173 -- 100.0
X Ray Diffraction 4.335 4.4434 -- 162 3135 0.1861 0.2174 -- 100.0
X Ray Diffraction 4.4434 4.5635 -- 143 3149 0.1796 0.2057 -- 100.0
X Ray Diffraction 4.5635 4.6978 -- 154 3164 0.1721 0.1968 -- 100.0
X Ray Diffraction 4.6978 4.8494 -- 157 3178 0.1766 0.2081 -- 100.0
X Ray Diffraction 4.8494 5.0226 -- 140 3165 0.1799 0.2149 -- 100.0
X Ray Diffraction 5.0226 5.2236 -- 165 3138 0.1773 0.2278 -- 100.0
X Ray Diffraction 5.2236 5.4612 -- 192 3123 0.1882 0.239 -- 100.0
X Ray Diffraction 5.4612 5.749 -- 173 3140 0.1947 0.2266 -- 100.0
X Ray Diffraction 5.749 6.1089 -- 179 3136 0.1959 0.2358 -- 100.0
X Ray Diffraction 6.1089 6.5801 -- 155 3161 0.2069 0.2039 -- 100.0
X Ray Diffraction 6.5801 7.2415 -- 151 3171 0.1945 0.2575 -- 100.0
X Ray Diffraction 7.2415 8.2874 -- 153 3166 0.1651 0.1667 -- 100.0
X Ray Diffraction 8.2874 10.4337 -- 175 3162 0.1419 0.1584 -- 100.0
X Ray Diffraction 10.4337 63.4947 -- 168 3195 0.1928 0.2067 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.575
f_chiral_restr 0.023
f_plane_restr 0.002
f_bond_d 0.002
f_dihedral_angle_d 11.925
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 27808
Nucleic Acid Atoms 389
Heterogen Atoms 9
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.4_1496
MOSFLM data reduction
SCALA data scaling
PHASER phasing