X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 290.0
Details 15% PEG3350, 0.1M Succinic acid pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 95.51 α = 90
b = 274.89 β = 90
c = 116.14 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-10-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.92 137.45 100.0 0.102 -- -- 6.6 -- 116126 -- -- 30.41
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.922 1.928 99.8 1.213 -- 2.0 6.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.92 28.14 -- 0.0 -- 116034 5847 100.0 -- 0.181 0.18 0.211 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.92 1.97 -- 431 8046 0.2377 0.2641 -- 99.85
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 36.04
Anisotropic B[1][1] -16.1699
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 8.1632
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 8.0066
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 1.06
t_other_torsion 16.57
t_bond_d 0.01
t_omega_torsion 3.65
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.24
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9883
Nucleic Acid Atoms 0
Heterogen Atoms 144
Solvent Atoms 858

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.7
AutoPROC data reduction
AutoPROC data scaling
PHASER phasing