6BHT

HIV-1 CA hexamer in complex with IP6, orthorhombic crystal form


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 8.2
Temperature 290.0
Details 8% PEG 8000, 0.1M Tris

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 135.32 α = 90
b = 137.17 β = 90
c = 209.35 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2017-08-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.69 50 99.3 0.06 -- -- 3.8 -- 108358 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.689 2.74 -- 0.79 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.689 39.77 -- 1.36 -- 95906 2000 88.23 -- 0.2273 0.2267 0.2546 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6885 2.7558 -- 40 2545 0.3094 0.3681 -- 34.0
X Ray Diffraction 2.7558 2.8303 -- 113 3840 0.3056 0.3555 -- 52.0
X Ray Diffraction 2.8303 2.9135 -- 86 5362 0.2931 0.2966 -- 71.0
X Ray Diffraction 2.9135 3.0075 -- 140 6672 0.2991 0.3666 -- 88.0
X Ray Diffraction 3.0075 3.115 -- 179 7342 0.2853 0.3371 -- 98.0
X Ray Diffraction 3.115 3.2396 -- 114 7533 0.2708 0.2963 -- 99.0
X Ray Diffraction 3.2396 3.387 -- 224 7498 0.267 0.3085 -- 100.0
X Ray Diffraction 3.387 3.5655 -- 112 7601 0.2544 0.3055 -- 100.0
X Ray Diffraction 3.5655 3.7887 -- 213 7468 0.2383 0.2831 -- 100.0
X Ray Diffraction 3.7887 4.081 -- 123 7593 0.2157 0.2603 -- 99.0
X Ray Diffraction 4.081 4.4911 -- 161 7537 0.1899 0.214 -- 99.0
X Ray Diffraction 4.4911 5.1398 -- 171 7558 0.1767 0.193 -- 99.0
X Ray Diffraction 5.1398 6.4711 -- 112 7683 0.2155 0.2028 -- 99.0
X Ray Diffraction 6.4711 39.7744 -- 212 7674 0.1765 0.1909 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.628
f_dihedral_angle_d 8.894
f_chiral_restr 0.356
f_plane_restr 0.004
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 19441
Nucleic Acid Atoms 0
Heterogen Atoms 144
Solvent Atoms 173

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
HKL-2000 data reduction
HKL-2000 data scaling
MOLREP phasing