X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 5.8
Temperature 277.0
Details 0.1M MES, 3.0M (NH4)2SO4

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 34.42 α = 90
b = 76.86 β = 90
c = 76.48 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2015-11-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.28 11.22 96.9 -- -- -- 5.36 -- 25429 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.285 11.224 -- 1.42 -- 25429 1291 96.84 -- 0.2418 0.241 0.2597 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.2845 1.3359 -- 135 2562 0.5129 0.487 -- 94.0
X Ray Diffraction 1.3359 1.3966 -- 136 2591 0.459 0.4177 -- 95.0
X Ray Diffraction 1.3966 1.47 -- 143 2609 0.4086 0.3904 -- 96.0
X Ray Diffraction 1.47 1.5619 -- 155 2686 0.3566 0.311 -- 97.0
X Ray Diffraction 1.5619 1.6821 -- 138 2684 0.2839 0.2668 -- 98.0
X Ray Diffraction 1.6821 1.8507 -- 165 2704 0.227 0.2526 -- 99.0
X Ray Diffraction 1.8507 2.117 -- 141 2732 0.1987 0.2032 -- 98.0
X Ray Diffraction 2.117 2.6613 -- 149 2752 0.218 0.2363 -- 98.0
X Ray Diffraction 2.6613 11.2242 -- 129 2818 0.2045 0.2403 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 28.7653
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.074
f_dihedral_angle_d 21.256
f_bond_d 0.004
f_angle_d 0.751
f_plane_restr 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 511
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 40

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155)
PDB_EXTRACT data extraction version: 3.20