X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.01M Nickel Chloride, PEG MEM 2000, 0.1M Tris HCl pH 8.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 64.87 α = 90
b = 30.67 β = 98.65
c = 77.96 γ = 90
Symmetry
Space Group P 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2016-10-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 50 98.74 0.0471 -- -- 6.6 -- 18186 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.14 -- 0.092 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 50.0 -- -- -- 17273 919 98.68 -- 0.16615 0.16296 0.22637 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.092 2.146 -- 52 1079 0.198 0.247 -- 85.23
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.458
Anisotropic B[1][1] 0.21
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.08
Anisotropic B[2][2] -0.12
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.11
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_1_deg 5.451
r_dihedral_angle_2_deg 37.206
r_mcbond_other 2.132
r_bond_other_d 0.001
r_scbond_other 3.364
r_long_range_B_refined 7.4
r_long_range_B_other 7.398
r_angle_refined_deg 1.603
r_gen_planes_refined 0.007
r_gen_planes_other 0.002
r_scangle_other 5.415
r_bond_refined_d 0.014
r_chiral_restr 0.103
r_mcbond_it 2.134
r_mcangle_other 3.138
r_dihedral_angle_3_deg 14.391
r_angle_other_deg 0.819
r_mcangle_it 3.139
r_dihedral_angle_4_deg 10.183
r_scbond_it 3.364
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2180
Nucleic Acid Atoms 0
Heterogen Atoms 73
Solvent Atoms 243

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0218
HKL-2000 data reduction
HKL-2000 data scaling
MOLREP phasing