X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 289.0
Details Ammonium sulfate, BIS TRIS propane

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 48.71 α = 90
b = 72.94 β = 90
c = 119.88 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2015-09-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL19U1 0.97846 SSRF BL19U1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 50 99.2 0.125 -- -- 6.1 -- 68493 -- -- 13.65
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.53 92.0 0.465 -- -- 3.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.501 30.894 -- 1.36 -- 67619 3428 98.0 -- 0.195 0.1934 0.2252 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5015 1.5229 -- 108 2149 0.2364 0.2565 0.0 79.0
X Ray Diffraction 1.5229 1.5456 -- 104 2440 0.2281 0.2385 0.0 91.0
X Ray Diffraction 1.5456 1.5698 -- 155 2566 0.211 0.2707 0.0 95.0
X Ray Diffraction 1.5698 1.5955 -- 143 2650 0.203 0.2555 0.0 98.0
X Ray Diffraction 1.5955 1.623 -- 157 2685 0.1921 0.2316 0.0 100.0
X Ray Diffraction 1.623 1.6525 -- 126 2681 0.1853 0.2071 0.0 100.0
X Ray Diffraction 1.6525 1.6843 -- 169 2666 0.187 0.2748 0.0 100.0
X Ray Diffraction 1.6843 1.7187 -- 134 2675 0.1973 0.2084 0.0 100.0
X Ray Diffraction 1.7187 1.7561 -- 156 2698 0.1933 0.2147 0.0 100.0
X Ray Diffraction 1.7561 1.7969 -- 155 2689 0.1844 0.2407 0.0 100.0
X Ray Diffraction 1.7969 1.8419 -- 132 2680 0.193 0.2392 0.0 100.0
X Ray Diffraction 1.8419 1.8916 -- 141 2701 0.1903 0.2183 0.0 100.0
X Ray Diffraction 1.8916 1.9473 -- 142 2727 0.1921 0.2153 0.0 100.0
X Ray Diffraction 1.9473 2.0101 -- 148 2689 0.1932 0.2511 0.0 100.0
X Ray Diffraction 2.0101 2.082 -- 140 2722 0.1942 0.2191 0.0 100.0
X Ray Diffraction 2.082 2.1653 -- 139 2687 0.191 0.2518 0.0 100.0
X Ray Diffraction 2.1653 2.2638 -- 142 2739 0.1914 0.2323 0.0 99.0
X Ray Diffraction 2.2638 2.3831 -- 147 2703 0.1936 0.2205 0.0 99.0
X Ray Diffraction 2.3831 2.5324 -- 142 2745 0.2043 0.2249 0.0 100.0
X Ray Diffraction 2.5324 2.7278 -- 137 2732 0.2069 0.2161 0.0 99.0
X Ray Diffraction 2.7278 3.0021 -- 163 2726 0.2119 0.2259 0.0 99.0
X Ray Diffraction 3.0021 3.436 -- 136 2774 0.2029 0.2256 0.0 99.0
X Ray Diffraction 3.436 4.3272 -- 135 2801 0.1712 0.2102 0.0 99.0
X Ray Diffraction 4.3272 30.9004 -- 177 2866 0.1806 0.2092 0.0 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 17.5884
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.006
f_chiral_restr 0.06
f_angle_d 0.9
f_plane_restr 0.006
f_dihedral_angle_d 17.88
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3497
Nucleic Acid Atoms 0
Heterogen Atoms 24
Solvent Atoms 357

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10_2155
HKL-2000 data scaling
PDB_EXTRACT data extraction version: 3.22
HKL-2000 data reduction
PHASER phasing