X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7.5
Temperature 293.0
Details 100mM HEPES pH7.5, 10% PEG 10000, 8% ethylene glycol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 148.29 α = 90
b = 148.29 β = 90
c = 148.29 γ = 90
Symmetry
Space Group I 2 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX225HE -- 2017-07-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.0 SPring-8 BL26B1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.1 39.6 100.0 0.08 -- -- 21.7 -- 10020 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.1 3.15 100.0 0.585 -- 7.39 21.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.102 19.816 -- 1.36 -- 9961 992 99.94 -- 0.2167 0.2134 0.246 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.102 3.2644 -- 139 1284 0.3175 0.3551 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.696
f_dihedral_angle_d 19.394
f_plane_restr 0.005
f_bond_d 0.005
f_chiral_restr 0.047
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2312
Nucleic Acid Atoms 0
Heterogen Atoms 41
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10.1_2155
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing version: 1.10.1_2155