X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Microbatch
pH 7.7
Temperature 293.0
Details 17%(w/v) PEG 3350, pH 7.7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 228.77 α = 90
b = 55.02 β = 103.28
c = 138.43 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2016-02-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.00000 Photon Factory AR-NW12A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 50 96.5 -- -- -- 4.4 -- 44657 -- -- 80.19
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.7 44.91 -- 0.0 -- 44655 2162 95.5 -- 0.268 0.266 0.306 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7 2.77 -- 102 2401 0.3 0.376 0.0 72.6
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 80.2
Anisotropic B[1][1] 15.0766
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -9.6194
Anisotropic B[2][2] -6.0833
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -8.9933
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 1.98
t_other_torsion 23.04
t_angle_deg 1.0
t_bond_d 0.008
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.51
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13032
Nucleic Acid Atoms 0
Heterogen Atoms 516
Solvent Atoms 0

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.2
HKL-2000 data reduction
HKL-2000 data scaling