X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.1M Bis-Tris 5.0, 22.5% PEG 3350, 5mM TCEP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.18 α = 90
b = 103.97 β = 101.4
c = 87.15 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2011-04-06
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.97924 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.85 50 98.0 -- -- -- 3.5 -- 105418 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.85 39.487 -- 1.34 -- 105211 5277 97.94 -- 0.1758 0.1735 0.2194 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.85 1.871 -- 171 3206 0.2505 0.3324 -- 97.0
X Ray Diffraction 1.871 1.893 -- 185 3301 0.2347 0.3067 -- 96.0
X Ray Diffraction 1.893 1.9161 -- 163 3258 0.2334 0.281 -- 96.0
X Ray Diffraction 1.9161 1.9404 -- 161 3270 0.2166 0.2632 -- 96.0
X Ray Diffraction 1.9404 1.9659 -- 177 3296 0.2137 0.2959 -- 97.0
X Ray Diffraction 1.9659 1.9928 -- 181 3252 0.2205 0.2759 -- 97.0
X Ray Diffraction 1.9928 2.0213 -- 167 3288 0.2138 0.2837 -- 97.0
X Ray Diffraction 2.0213 2.0515 -- 159 3277 0.1973 0.2765 -- 97.0
X Ray Diffraction 2.0515 2.0835 -- 172 3292 0.1934 0.2371 -- 97.0
X Ray Diffraction 2.0835 2.1177 -- 200 3289 0.1848 0.2285 -- 97.0
X Ray Diffraction 2.1177 2.1542 -- 184 3232 0.1851 0.2557 -- 97.0
X Ray Diffraction 2.1542 2.1934 -- 175 3313 0.1779 0.2637 -- 97.0
X Ray Diffraction 2.1934 2.2356 -- 169 3308 0.1758 0.2475 -- 97.0
X Ray Diffraction 2.2356 2.2812 -- 167 3295 0.1869 0.2619 -- 98.0
X Ray Diffraction 2.2812 2.3308 -- 185 3355 0.1844 0.2574 -- 98.0
X Ray Diffraction 2.3308 2.385 -- 179 3312 0.182 0.239 -- 98.0
X Ray Diffraction 2.385 2.4446 -- 194 3314 0.18 0.2238 -- 99.0
X Ray Diffraction 2.4446 2.5107 -- 191 3345 0.1758 0.2445 -- 99.0
X Ray Diffraction 2.5107 2.5846 -- 195 3371 0.1784 0.2248 -- 99.0
X Ray Diffraction 2.5846 2.668 -- 182 3352 0.177 0.2415 -- 99.0
X Ray Diffraction 2.668 2.7633 -- 178 3380 0.1805 0.2224 -- 99.0
X Ray Diffraction 2.7633 2.8739 -- 175 3388 0.1802 0.248 -- 99.0
X Ray Diffraction 2.8739 3.0047 -- 173 3406 0.1767 0.2133 -- 99.0
X Ray Diffraction 3.0047 3.163 -- 185 3377 0.178 0.2281 -- 99.0
X Ray Diffraction 3.163 3.3611 -- 167 3376 0.1677 0.218 -- 100.0
X Ray Diffraction 3.3611 3.6205 -- 169 3426 0.1587 0.1959 -- 99.0
X Ray Diffraction 3.6205 3.9845 -- 180 3389 0.1454 0.1806 -- 99.0
X Ray Diffraction 3.9845 4.5603 -- 174 3396 0.1343 0.1533 -- 99.0
X Ray Diffraction 4.5603 5.7427 -- 151 3450 0.1544 0.1788 -- 99.0
X Ray Diffraction 5.7427 39.4959 -- 168 3420 0.1832 0.1953 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 17.232
f_chiral_restr 0.14
f_plane_restr 0.011
f_bond_d 0.023
f_angle_d 1.89
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9735
Nucleic Acid Atoms 0
Heterogen Atoms 208
Solvent Atoms 1003

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.4_1496
HKL-3000 data reduction
HKL-3000 data scaling
PHASER phasing