X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.3
Temperature 289.0
Details 0.1 M HEPES (pH 7.3), 7% (w/v) PEG8000, 8% (v/v) ethylene glycerol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 101.35 α = 90
b = 101.35 β = 90
c = 146.98 γ = 120
Symmetry
Space Group P 32

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2014-04-13
Diffraction Radiation
Monochromator Protocol
-- MAD
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL17U 0.97915 SSRF BL17U

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 33.9 99.86 -- -- -- 7.37 -- 66810 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9995 3.05 99.78 -- -- 4.84 6.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.0 33.895 -- 1.96 -- 66810 3394 98.79 -- 0.2632 0.261 0.3023 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9995 3.0423 -- 110 2272 0.5368 0.5833 -- 85.0
X Ray Diffraction 3.0423 3.0877 -- 126 2518 0.4311 0.501 -- 92.0
X Ray Diffraction 3.0877 3.1359 -- 146 2652 0.3824 0.3879 -- 100.0
X Ray Diffraction 3.1359 3.1873 -- 144 2666 0.3578 0.3688 -- 98.0
X Ray Diffraction 3.1873 3.2422 -- 160 2558 0.3272 0.3484 -- 100.0
X Ray Diffraction 3.2422 3.3011 -- 148 2660 0.3397 0.37 -- 99.0
X Ray Diffraction 3.3011 3.3646 -- 124 2698 0.3484 0.429 -- 100.0
X Ray Diffraction 3.3646 3.4332 -- 160 2712 0.3289 0.3752 -- 100.0
X Ray Diffraction 3.4332 3.5078 -- 116 2670 0.3147 0.3598 -- 100.0
X Ray Diffraction 3.5078 3.5893 -- 142 2668 0.295 0.3963 -- 100.0
X Ray Diffraction 3.5893 3.6789 -- 134 2688 0.2868 0.3421 -- 100.0
X Ray Diffraction 3.6789 3.7783 -- 148 2656 0.2683 0.3542 -- 100.0
X Ray Diffraction 3.7783 3.8893 -- 138 2714 0.2672 0.3628 -- 100.0
X Ray Diffraction 3.8893 4.0147 -- 120 2644 0.266 0.3399 -- 100.0
X Ray Diffraction 4.0147 4.1579 -- 132 2664 0.2554 0.304 -- 99.0
X Ray Diffraction 4.1579 4.3241 -- 146 2648 0.2335 0.2974 -- 100.0
X Ray Diffraction 4.3241 4.5204 -- 196 2576 0.2095 0.2461 -- 100.0
X Ray Diffraction 4.5204 4.7581 -- 152 2670 0.2163 0.2441 -- 100.0
X Ray Diffraction 4.7581 5.0553 -- 132 2738 0.2097 0.2956 -- 100.0
X Ray Diffraction 5.0553 5.4442 -- 154 2660 0.2369 0.2575 -- 100.0
X Ray Diffraction 5.4442 5.9894 -- 118 2698 0.2683 0.3401 -- 100.0
X Ray Diffraction 5.9894 6.8498 -- 132 2680 0.2677 0.3247 -- 100.0
X Ray Diffraction 6.8498 8.6066 -- 156 2644 0.2259 0.2312 -- 100.0
X Ray Diffraction 8.6066 33.897 -- 160 2662 0.2266 0.2449 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.742
f_dihedral_angle_d 15.648
f_bond_d 0.003
f_chiral_restr 0.045
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5914
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing