X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.1M bis-Tris pH5.5, 0.2M Ammunium sulfate, 25% PEG3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.33 α = 90
b = 63.7 β = 90
c = 161.41 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-04-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.00 PAL/PLS 5C (4A)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.95 37.96 98.2 -- -- -- 5.9 -- 43749 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.952 29.165 -- 1.34 -- 43749 2193 98.2 -- 0.1492 0.1477 0.1787 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9524 1.9948 -- 100 2186 0.1578 0.1731 -- 84.0
X Ray Diffraction 1.9948 2.0412 -- 121 2474 0.1536 0.1958 -- 95.0
X Ray Diffraction 2.0412 2.0922 -- 124 2601 0.1423 0.1763 -- 98.0
X Ray Diffraction 2.0922 2.1488 -- 144 2579 0.1416 0.1632 -- 100.0
X Ray Diffraction 2.1488 2.212 -- 143 2608 0.1404 0.1889 -- 100.0
X Ray Diffraction 2.212 2.2834 -- 145 2605 0.1514 0.1888 -- 100.0
X Ray Diffraction 2.2834 2.3649 -- 144 2604 0.152 0.1902 -- 100.0
X Ray Diffraction 2.3649 2.4596 -- 134 2652 0.1561 0.2232 -- 100.0
X Ray Diffraction 2.4596 2.5714 -- 136 2606 0.1636 0.1931 -- 100.0
X Ray Diffraction 2.5714 2.7069 -- 142 2628 0.1625 0.1982 -- 100.0
X Ray Diffraction 2.7069 2.8764 -- 157 2629 0.168 0.213 -- 100.0
X Ray Diffraction 2.8764 3.0982 -- 139 2656 0.1678 0.1626 -- 100.0
X Ray Diffraction 3.0982 3.4096 -- 144 2651 0.1527 0.1714 -- 100.0
X Ray Diffraction 3.4096 3.902 -- 152 2664 0.1288 0.1541 -- 100.0
X Ray Diffraction 3.902 4.9123 -- 130 2700 0.1155 0.1665 -- 99.0
X Ray Diffraction 4.9123 29.1682 -- 138 2713 0.1589 0.1759 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.06
f_dihedral_angle_d 12.927
f_chiral_restr 0.044
f_bond_d 0.007
f_plane_restr 0.005
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3290
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 607

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing