X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Batch Mode
Temperature 293.0
Details PEG, magnesium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 124.96 α = 90
b = 230.22 β = 90
c = 286.02 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 293
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MPCCD -- 2016-10-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
FREE ELECTRON LASER SACLA BEAMLINE BL3 1.77 SACLA BL3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.35 50 100.0 -- -- -- 742.0 -- 357084 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.35 2.44 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.35 19.996 -- 1.35 -- 340385 17088 99.97 -- 0.1313 0.1289 0.1751 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.35 2.3767 -- 545 10707 0.288 0.3298 -- 100.0
X Ray Diffraction 2.3767 2.4046 -- 531 10759 0.262 0.3199 -- 100.0
X Ray Diffraction 2.4046 2.4339 -- 589 10575 0.2588 0.3137 -- 100.0
X Ray Diffraction 2.4339 2.4646 -- 539 10744 0.2399 0.3007 -- 100.0
X Ray Diffraction 2.4646 2.497 -- 572 10780 0.2243 0.2713 -- 100.0
X Ray Diffraction 2.497 2.5311 -- 537 10620 0.2155 0.2768 -- 100.0
X Ray Diffraction 2.5311 2.5672 -- 560 10757 0.1953 0.2519 -- 100.0
X Ray Diffraction 2.5672 2.6054 -- 613 10692 0.1882 0.2529 -- 100.0
X Ray Diffraction 2.6054 2.6461 -- 546 10690 0.1667 0.2229 -- 100.0
X Ray Diffraction 2.6461 2.6894 -- 579 10675 0.162 0.2185 -- 100.0
X Ray Diffraction 2.6894 2.7356 -- 583 10719 0.1563 0.2231 -- 100.0
X Ray Diffraction 2.7356 2.7852 -- 578 10743 0.1486 0.2143 -- 100.0
X Ray Diffraction 2.7852 2.8387 -- 553 10740 0.1348 0.2036 -- 100.0
X Ray Diffraction 2.8387 2.8964 -- 565 10704 0.1325 0.1922 -- 100.0
X Ray Diffraction 2.8964 2.9592 -- 548 10763 0.1263 0.1904 -- 100.0
X Ray Diffraction 2.9592 3.0278 -- 574 10708 0.1221 0.1823 -- 100.0
X Ray Diffraction 3.0278 3.1033 -- 562 10765 0.1206 0.1875 -- 100.0
X Ray Diffraction 3.1033 3.1869 -- 557 10749 0.1189 0.1738 -- 100.0
X Ray Diffraction 3.1869 3.2802 -- 607 10773 0.1177 0.1672 -- 100.0
X Ray Diffraction 3.2802 3.3856 -- 570 10747 0.1121 0.1669 -- 100.0
X Ray Diffraction 3.3856 3.506 -- 587 10735 0.1132 0.1701 -- 100.0
X Ray Diffraction 3.506 3.6456 -- 556 10801 0.1094 0.1598 -- 100.0
X Ray Diffraction 3.6456 3.8104 -- 566 10804 0.111 0.1611 -- 100.0
X Ray Diffraction 3.8104 4.0098 -- 587 10800 0.1077 0.1451 -- 100.0
X Ray Diffraction 4.0098 4.2587 -- 557 10827 0.1126 0.156 -- 100.0
X Ray Diffraction 4.2587 4.5839 -- 579 10880 0.1092 0.1401 -- 100.0
X Ray Diffraction 4.5839 5.0385 -- 559 10895 0.1148 0.1532 -- 100.0
X Ray Diffraction 5.0385 5.7524 -- 581 10893 0.1317 0.1876 -- 100.0
X Ray Diffraction 5.7524 7.1909 -- 584 10994 0.1343 0.1742 -- 100.0
X Ray Diffraction 7.1909 19.9965 -- 624 11258 0.1318 0.1505 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.049
f_plane_restr 0.01
f_bond_d 0.009
f_dihedral_angle_d 22.098
f_angle_d 1.37
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 41493
Nucleic Acid Atoms 0
Heterogen Atoms 9350
Solvent Atoms 1574

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
CrystFEL data reduction
CrystFEL data scaling
PHASER phasing