X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 277.0
Details 50 mM MES pH 6, 6% PEG 3350, 1 M NaCl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 61.15 α = 90
b = 241.44 β = 90
c = 214.84 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS EIGER X 9M -- 2016-11-10
Diffraction Radiation
Monochromator Protocol
Diamond (111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.31 47.48 99.0 -- 0.055 -- 2.0 -- 132268 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.31 2.39 100.0 -- 0.928 1.1 13.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.31 19.956 -- 1.33 -- 132207 3773 98.23 -- 0.235 0.2337 0.2786 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.31 2.3392 -- 142 4704 0.4625 0.4974 -- 96.0
X Ray Diffraction 2.3392 2.3699 -- 134 4629 0.4421 0.4351 -- 96.0
X Ray Diffraction 2.3699 2.4024 -- 134 4642 0.4388 0.4846 -- 96.0
X Ray Diffraction 2.4024 2.4366 -- 143 4703 0.4296 0.3868 -- 96.0
X Ray Diffraction 2.4366 2.4729 -- 143 4600 0.4197 0.4653 -- 97.0
X Ray Diffraction 2.4729 2.5115 -- 141 4678 0.4054 0.4235 -- 97.0
X Ray Diffraction 2.5115 2.5526 -- 138 4771 0.3897 0.4473 -- 97.0
X Ray Diffraction 2.5526 2.5965 -- 137 4716 0.3686 0.3684 -- 98.0
X Ray Diffraction 2.5965 2.6436 -- 138 4751 0.3645 0.3677 -- 98.0
X Ray Diffraction 2.6436 2.6943 -- 142 4710 0.3494 0.3486 -- 98.0
X Ray Diffraction 2.6943 2.7492 -- 139 4758 0.3368 0.3634 -- 98.0
X Ray Diffraction 2.7492 2.8088 -- 138 4743 0.3349 0.3368 -- 98.0
X Ray Diffraction 2.8088 2.874 -- 134 4683 0.3182 0.3164 -- 97.0
X Ray Diffraction 2.874 2.9456 -- 142 4796 0.305 0.3612 -- 99.0
X Ray Diffraction 2.9456 3.025 -- 137 4859 0.3036 0.389 -- 100.0
X Ray Diffraction 3.025 3.1137 -- 138 4811 0.2878 0.4071 -- 99.0
X Ray Diffraction 3.1137 3.2138 -- 144 4868 0.2656 0.3288 -- 100.0
X Ray Diffraction 3.2138 3.3282 -- 140 4771 0.2475 0.3041 -- 100.0
X Ray Diffraction 3.3282 3.4608 -- 138 4822 0.2407 0.275 -- 99.0
X Ray Diffraction 3.4608 3.6174 -- 142 4843 0.2108 0.2501 -- 100.0
X Ray Diffraction 3.6174 3.8069 -- 143 4785 0.2015 0.2482 -- 99.0
X Ray Diffraction 3.8069 4.0435 -- 143 4791 0.1908 0.2622 -- 99.0
X Ray Diffraction 4.0435 4.3527 -- 143 4811 0.167 0.2196 -- 99.0
X Ray Diffraction 4.3527 4.7853 -- 138 4849 0.1476 0.1996 -- 100.0
X Ray Diffraction 4.7853 5.4653 -- 141 4668 0.1596 0.1828 -- 97.0
X Ray Diffraction 5.4653 6.8393 -- 143 4836 0.1861 0.2801 -- 100.0
X Ray Diffraction 6.8393 19.9569 -- 138 4836 0.1499 0.1857 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.04
f_plane_restr 0.003
f_bond_d 0.002
f_angle_d 0.494
f_dihedral_angle_d 13.904
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8143
Nucleic Acid Atoms 0
Heterogen Atoms 34
Solvent Atoms 143

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
xia2 data reduction
xia2 data scaling
PHASER phasing