X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 298.0
Details 0.1 M Bis-Tris propane pH 7.0, 0.1 M Na fluoride and 20 % PEG 8000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 46.19 α = 90
b = 136.95 β = 107.06
c = 70.96 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2016-10-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.74 68.47 99.6 -- -- -- 8.7 -- 86176 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.74 1.77 92.8 -- -- 2.7 8.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.74 68.47 -- -- -- 81743 4391 99.55 -- 0.16259 0.1605 0.20074 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.737 1.782 -- 296 5729 0.236 0.269 -- 94.63
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 25.852
Anisotropic B[1][1] 0.97
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.15
Anisotropic B[2][2] -0.65
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.19
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.001
r_gen_planes_refined 0.016
r_dihedral_angle_3_deg 13.552
r_scbond_other 1.876
r_chiral_restr 0.151
r_mcangle_it 1.674
r_long_range_B_other 5.591
r_dihedral_angle_4_deg 18.64
r_bond_refined_d 0.027
r_angle_other_deg 1.163
r_mcangle_other 1.674
r_scangle_other 2.892
r_bond_other_d 0.002
r_dihedral_angle_1_deg 6.533
r_mcbond_it 1.136
r_long_range_B_refined 5.678
r_dihedral_angle_2_deg 31.668
r_scbond_it 1.876
r_angle_refined_deg 2.313
r_mcbond_other 1.136
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6248
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 787

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
MOSFLM data reduction
SCALA data scaling
PHASER phasing