X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 8-12% PEG8000, 0.12 M ethylene glycol, 0.1 M Tris(base):Bicine, pH 8.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.86 α = 90
b = 136.1 β = 90
c = 186.73 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-02-26
Diffraction Radiation
Monochromator Protocol
Si(220) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.3 0.9765 ALS 5.0.3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 50 100.0 0.159 -- -- 6.5 -- 46364 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.44 100.0 0.895 -- -- 6.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 30.0 -- 0.0 -- 43991 2320 99.43 -- 0.1929 0.1912 0.2255 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.462 -- 144 3020 0.278 0.31 0.0 93.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 43.593
Anisotropic B[1][1] 0.61
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -2.55
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.95
RMS Deviations
Key Refinement Restraint Deviation
r_angle_other_deg 0.923
r_dihedral_angle_1_deg 5.925
r_dihedral_angle_2_deg 37.0
r_bond_other_d 0.002
r_angle_refined_deg 1.292
r_bond_refined_d 0.007
r_dihedral_angle_4_deg 14.758
r_gen_planes_other 0.001
r_dihedral_angle_3_deg 14.141
r_gen_planes_refined 0.004
r_chiral_restr 0.069
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6644
Nucleic Acid Atoms 0
Heterogen Atoms 202
Solvent Atoms 441

Software

Software
Software Name Purpose
HKL-2000 data collection
HKL-2000 data scaling
REFMAC refinement version: 5.8.0135
PDB_EXTRACT data extraction version: 3.22