X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Microbatch
Temperature 289.0
Details 0.05-0.3 mM sodium citrate, 100 mM bBis-Tris propane, and 17-23% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 138.36 α = 90
b = 170.55 β = 90
c = 97.31 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2016-10-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.41 107.45 99.6 0.128 -- -- 7.1 -- 16046 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.41 3.68 98.3 1.545 -- -- 7.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.41 107.45 -- 0.0 -- 15243 788 99.53 -- 0.2395 0.2369 0.2944 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.408 3.496 -- 56 1066 0.41 0.382 0.0 95.08
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 155.826
Anisotropic B[1][1] 7.08
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.58
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -8.66
RMS Deviations
Key Refinement Restraint Deviation
r_angle_other_deg 0.859
r_gen_planes_other 0.001
r_bond_refined_d 0.008
r_dihedral_angle_4_deg 13.067
r_dihedral_angle_3_deg 14.032
r_dihedral_angle_1_deg 5.93
r_gen_planes_refined 0.004
r_angle_refined_deg 1.086
r_chiral_restr 0.062
r_bond_other_d 0.001
r_dihedral_angle_2_deg 36.03
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5321
Nucleic Acid Atoms 0
Heterogen Atoms 6
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
Aimless data scaling version: 0.5.27
PHASER phasing
PDB_EXTRACT data extraction version: 3.22
XDS data reduction