X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 8
Temperature 277.0
Details 35% dioxane

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.98 α = 90
b = 50.98 β = 90
c = 116.52 γ = 120
Symmetry
Space Group P 32

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2016-11-17
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL9-2 0.979 SSRL BL9-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.24 44.15 99.1 0.046 -- -- 4.8 -- 95873 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.237 41.286 -- 1.98 -- 95812 4939 99.05 -- 0.1224 0.1213 0.1433 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.237 1.251 -- 162 3048 0.2223 0.2474 -- 100.0
X Ray Diffraction 1.251 1.2658 -- 136 3045 0.2118 0.2606 -- 100.0
X Ray Diffraction 1.2658 1.2812 -- 170 3123 0.194 0.2507 -- 100.0
X Ray Diffraction 1.2812 1.2974 -- 196 3008 0.1883 0.225 -- 100.0
X Ray Diffraction 1.2974 1.3145 -- 160 3046 0.1802 0.194 -- 100.0
X Ray Diffraction 1.3145 1.3325 -- 202 2947 0.1631 0.2028 -- 99.0
X Ray Diffraction 1.3325 1.3515 -- 155 2937 0.1597 0.182 -- 95.0
X Ray Diffraction 1.3515 1.3717 -- 159 3027 0.1498 0.1854 -- 98.0
X Ray Diffraction 1.3717 1.3932 -- 178 3031 0.1395 0.1799 -- 100.0
X Ray Diffraction 1.3932 1.416 -- 182 3082 0.1355 0.1925 -- 100.0
X Ray Diffraction 1.416 1.4404 -- 164 3001 0.1315 0.1671 -- 100.0
X Ray Diffraction 1.4404 1.4666 -- 150 3063 0.1212 0.1505 -- 100.0
X Ray Diffraction 1.4666 1.4948 -- 176 3052 0.1075 0.1434 -- 99.0
X Ray Diffraction 1.4948 1.5253 -- 170 2993 0.1004 0.1249 -- 99.0
X Ray Diffraction 1.5253 1.5585 -- 122 3013 0.0999 0.1258 -- 97.0
X Ray Diffraction 1.5585 1.5948 -- 176 2886 0.1018 0.1524 -- 94.0
X Ray Diffraction 1.5948 1.6346 -- 170 3058 0.0984 0.1335 -- 100.0
X Ray Diffraction 1.6346 1.6788 -- 179 3026 0.0942 0.1272 -- 100.0
X Ray Diffraction 1.6788 1.7282 -- 142 3074 0.0951 0.1192 -- 100.0
X Ray Diffraction 1.7282 1.784 -- 150 3095 0.0968 0.1372 -- 100.0
X Ray Diffraction 1.784 1.8478 -- 140 3060 0.1032 0.1369 -- 100.0
X Ray Diffraction 1.8478 1.9218 -- 150 3034 0.1024 0.117 -- 99.0
X Ray Diffraction 1.9218 2.0092 -- 197 2902 0.1073 0.1174 -- 96.0
X Ray Diffraction 2.0092 2.1152 -- 140 3114 0.1066 0.1398 -- 100.0
X Ray Diffraction 2.1152 2.2477 -- 202 2985 0.1107 0.1373 -- 100.0
X Ray Diffraction 2.2477 2.4212 -- 160 3074 0.1077 0.1267 -- 100.0
X Ray Diffraction 2.4212 2.6648 -- 160 3055 0.1164 0.1386 -- 100.0
X Ray Diffraction 2.6648 3.0503 -- 158 2990 0.1245 0.1442 -- 98.0
X Ray Diffraction 3.0503 3.8426 -- 155 3082 0.126 0.1249 -- 100.0
X Ray Diffraction 3.8426 41.3085 -- 178 3022 0.1341 0.1444 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 22.33
f_angle_d 1.033
f_plane_restr 0.008
f_chiral_restr 0.081
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2738
Nucleic Acid Atoms 0
Heterogen Atoms 100
Solvent Atoms 377

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155)
iMOSFLM data reduction
Aimless data scaling
PHASER phasing