X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7.5
Temperature 289.0
Details Fab at 10 mg/mL against Wiz 34 screen condition B4 20% PEG 3350, 0.2 M potassium citrate tribasic supplemented with 20% ethylene glycol as cryo-protectant, crystal tracking ID 267664b4, unique puck ID sdw5-2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.58 α = 90
b = 138.82 β = 90
c = 195.46 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2015-11-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 50 100.0 0.126 -- -- 6.246 -- 79590 -- -3.0 21.24
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.05 100.0 0.539 -- 3.7 6.289 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 50.0 -- 1.36 -- 79576 3868 99.95 -- 0.1617 0.1597 0.1996 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.0244 -- 122 2667 0.2246 0.2778 0.0 100.0
X Ray Diffraction 2.0244 2.05 -- 134 2711 0.1968 0.2572 0.0 100.0
X Ray Diffraction 2.05 2.077 -- 146 2646 0.1892 0.2593 0.0 100.0
X Ray Diffraction 2.077 2.1054 -- 143 2712 0.1885 0.2607 0.0 100.0
X Ray Diffraction 2.1054 2.1355 -- 116 2650 0.185 0.2294 0.0 100.0
X Ray Diffraction 2.1355 2.1674 -- 138 2699 0.1723 0.2063 0.0 100.0
X Ray Diffraction 2.1674 2.2013 -- 133 2686 0.1658 0.2168 0.0 100.0
X Ray Diffraction 2.2013 2.2373 -- 119 2688 0.1704 0.2119 0.0 100.0
X Ray Diffraction 2.2373 2.2759 -- 131 2727 0.1727 0.1993 0.0 100.0
X Ray Diffraction 2.2759 2.3173 -- 131 2625 0.1691 0.2073 0.0 100.0
X Ray Diffraction 2.3173 2.3619 -- 141 2699 0.169 0.2297 0.0 100.0
X Ray Diffraction 2.3619 2.4101 -- 119 2738 0.174 0.2076 0.0 100.0
X Ray Diffraction 2.4101 2.4625 -- 137 2665 0.1705 0.2218 0.0 100.0
X Ray Diffraction 2.4625 2.5198 -- 125 2688 0.1734 0.2036 0.0 100.0
X Ray Diffraction 2.5198 2.5828 -- 147 2697 0.1658 0.2209 0.0 100.0
X Ray Diffraction 2.5828 2.6526 -- 152 2669 0.1661 0.2036 0.0 100.0
X Ray Diffraction 2.6526 2.7306 -- 152 2695 0.17 0.2175 0.0 100.0
X Ray Diffraction 2.7306 2.8188 -- 150 2688 0.1669 0.245 0.0 100.0
X Ray Diffraction 2.8188 2.9195 -- 125 2724 0.1659 0.187 0.0 100.0
X Ray Diffraction 2.9195 3.0364 -- 134 2707 0.1719 0.2101 0.0 100.0
X Ray Diffraction 3.0364 3.1745 -- 125 2706 0.168 0.2198 0.0 100.0
X Ray Diffraction 3.1745 3.3419 -- 141 2713 0.1584 0.1887 0.0 100.0
X Ray Diffraction 3.3419 3.5512 -- 147 2707 0.1543 0.1668 0.0 100.0
X Ray Diffraction 3.5512 3.8253 -- 160 2683 0.1484 0.1885 0.0 100.0
X Ray Diffraction 3.8253 4.21 -- 154 2732 0.1319 0.1842 0.0 100.0
X Ray Diffraction 4.21 4.8187 -- 160 2755 0.1132 0.1432 0.0 100.0
X Ray Diffraction 4.8187 6.0691 -- 122 2778 0.1345 0.1693 0.0 100.0
X Ray Diffraction 6.0691 47.5173 -- 164 2853 0.1728 0.2062 0.0 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.218
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_bond_d 0.006
f_chiral_restr 0.053
f_angle_d 0.788
f_dihedral_angle_d 13.08
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6515
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 1047

Software

Software
Software Name Purpose
XSCALE data scaling
Coot model building
PHENIX refinement version: dev_2229
PDB_EXTRACT data extraction version: 3.22
XDS data reduction
PHASER phasing