X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 291.0
Details 14 MG/ML MYT1, 50 mM HEPES PH 7.5, 0.5 mM DTT, 0.05 M POTASSIUM CHLORIDE, 17.5 (V/V) % pentaerythritol propoxylate (5/4 PO/OH), 1.5 mM BOSUTINIB

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 46.63 α = 90
b = 55 β = 90
c = 113.66 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2016-10-19
Diffraction Radiation
Monochromator Protocol
ROSENBAUM-ROCK DOUBLE-CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 1.00 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.56 36.05 98.3 0.048 -- -- 2.833 -- 41721 -- -3.0 15.19
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.56 1.6 98.9 0.358 -- 2.86 2.824 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.56 36.048 -- 1.36 -- 41719 1252 98.29 -- -- 0.1397 0.1778 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5599 1.6224 -- 137 4442 0.1628 0.2243 0.0 99.0
X Ray Diffraction 1.6224 1.6962 -- 137 4433 0.1521 0.2404 0.0 99.0
X Ray Diffraction 1.6962 1.7856 -- 139 4494 0.1373 0.1952 0.0 99.0
X Ray Diffraction 1.7856 1.8975 -- 140 4516 0.1237 0.1971 0.0 100.0
X Ray Diffraction 1.8975 2.044 -- 139 4504 0.1168 0.1655 0.0 99.0
X Ray Diffraction 2.044 2.2497 -- 140 4524 0.1183 0.1519 0.0 99.0
X Ray Diffraction 2.2497 2.5751 -- 141 4541 0.133 0.1764 0.0 99.0
X Ray Diffraction 2.5751 3.2441 -- 139 4507 0.1501 0.1942 0.0 98.0
X Ray Diffraction 3.2441 36.0579 -- 140 4506 0.1511 0.1659 0.0 93.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 25.3139
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.043
f_angle_d 1.179
f_plane_restr 0.006
f_dihedral_angle_d 14.751
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2302
Nucleic Acid Atoms 0
Heterogen Atoms 122
Solvent Atoms 237

Software

Software
Software Name Purpose
XSCALE data scaling
SERGUI data collection
PHENIX refinement version: 1.9_1692
PDB_EXTRACT data extraction version: 3.22
XDS data reduction
PHASER phasing