X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4.6
Temperature 278.0
Details 0.2 M Ammonium sulfate, 0.1 M Sodium acetate trihydrate pH4.6, 30% w/v Polyethylene glycol monomethyl ether 2000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 27.65 α = 90
b = 39.26 β = 98.43
c = 29.03 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 113
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU -- 2016-10-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.45 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.45 27.35 91.9 -- -- -- 3.5 -- 10105 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.45 27.351 -- 1.43 -- 10105 483 91.93 -- 0.1681 0.1672 0.187 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.45 1.6598 -- 149 2901 0.1798 0.2415 -- 84.0
X Ray Diffraction 1.6598 2.0911 -- 145 3303 0.1816 0.1768 -- 94.0
X Ray Diffraction 2.0911 27.3561 -- 189 3418 0.1584 0.181 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.005
f_dihedral_angle_d 18.374
f_angle_d 0.804
f_plane_restr 0.005
f_chiral_restr 0.084
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 607
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 129

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
SCALEPACK data scaling
PHASER phasing