5UFZ

HIV-1 Protease complexed with Inhibitor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2S)-1-(1-{[(4-aminophenyl)sulfonyl](2-methylpropyl)amino}cyclopropyl)-1-hydroxy-3-phenylpropan-2-yl]carbamate


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.5 M Potassium thiocyanate, 0.1 M BIS-TRIS propane pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.95 α = 90
b = 57.07 β = 90
c = 86.47 γ = 90
Symmetry
Space Group P 2 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV++ -- 2013-10-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.54178 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 35.79 98.2 -- -- -- 4.3 -- 118689 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.649 35.789 -- 0.17 -- 27063 2000 96.12 -- 0.1761 0.174 0.2026 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6485 1.6897 -- 130 1634 0.1761 0.2202 -- 89.0
X Ray Diffraction 1.6897 1.7354 -- 133 1661 0.1772 0.2278 -- 92.0
X Ray Diffraction 1.7354 1.7865 -- 137 1705 0.1877 0.2625 -- 93.0
X Ray Diffraction 1.7865 1.8441 -- 137 1734 0.1891 0.2339 -- 94.0
X Ray Diffraction 1.8441 1.9101 -- 139 1740 0.1729 0.2365 -- 95.0
X Ray Diffraction 1.9101 1.9865 -- 142 1771 0.1661 0.2189 -- 96.0
X Ray Diffraction 1.9865 2.0769 -- 141 1779 0.1676 0.2154 -- 97.0
X Ray Diffraction 2.0769 2.1864 -- 145 1800 0.1673 0.1849 -- 97.0
X Ray Diffraction 2.1864 2.3234 -- 143 1802 0.1791 0.217 -- 98.0
X Ray Diffraction 2.3234 2.5027 -- 146 1835 0.1795 0.2049 -- 98.0
X Ray Diffraction 2.5027 2.7545 -- 148 1849 0.1858 0.2172 -- 99.0
X Ray Diffraction 2.7545 3.1529 -- 150 1882 0.1808 0.1969 -- 99.0
X Ray Diffraction 3.1529 3.9715 -- 151 1887 0.1695 0.1928 -- 99.0
X Ray Diffraction 3.9715 35.7978 -- 158 1984 0.1636 0.1665 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.066
f_dihedral_angle_d 13.693
f_plane_restr 0.005
f_bond_d 0.006
f_angle_d 1.043
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1518
Nucleic Acid Atoms 0
Heterogen Atoms 40
Solvent Atoms 229

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.2_1309
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing