X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 291.0
Details calcium chloride, cadmium chloride, cobalt(II) chloride hexahydrate, PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 119.72 α = 90
b = 42.71 β = 113.33
c = 100.24 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV++ -- 2016-01-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 45.17 97.68 0.1016 -- -- 7.3 -- 23511 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.199 2.278 93.48 0.3521 -- 4.5 6.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.199 45.174 -- 1.37 -- 23486 1996 97.58 -- 0.2056 0.2003 0.2634 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1991 2.2541 -- 132 1448 0.2336 0.3127 -- 92.0
X Ray Diffraction 2.2541 2.315 -- 138 1470 0.2462 0.3091 -- 96.0
X Ray Diffraction 2.315 2.3832 -- 142 1525 0.2352 0.336 -- 97.0
X Ray Diffraction 2.3832 2.4601 -- 139 1492 0.2313 0.2527 -- 97.0
X Ray Diffraction 2.4601 2.548 -- 143 1546 0.2356 0.3236 -- 97.0
X Ray Diffraction 2.548 2.65 -- 142 1523 0.2369 0.2768 -- 97.0
X Ray Diffraction 2.65 2.7706 -- 140 1511 0.2476 0.2952 -- 98.0
X Ray Diffraction 2.7706 2.9166 -- 145 1546 0.2425 0.3529 -- 98.0
X Ray Diffraction 2.9166 3.0993 -- 141 1525 0.227 0.3182 -- 98.0
X Ray Diffraction 3.0993 3.3386 -- 146 1563 0.223 0.2614 -- 99.0
X Ray Diffraction 3.3386 3.6744 -- 144 1555 0.2002 0.2882 -- 99.0
X Ray Diffraction 3.6744 4.2058 -- 147 1576 0.1661 0.221 -- 99.0
X Ray Diffraction 4.2058 5.2975 -- 146 1571 0.156 0.1984 -- 99.0
X Ray Diffraction 5.2975 45.174 -- 151 1639 0.1783 0.2365 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_dihedral_angle_d 15.108
f_chiral_restr 0.044
f_bond_d 0.009
f_angle_d 1.152
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3504
Nucleic Acid Atoms 0
Heterogen Atoms 74
Solvent Atoms 114

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.4_1496
PHENIX phasing version: 1.8.4_1496
HKL-3000 data reduction
HKL-3000 data scaling