X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 296.0
Details 0.1 M Hepes pH 7.4, 40 mM NaCl, 29 % PEG3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 56.41 α = 90
b = 58.88 β = 90
c = 174.39 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2016-12-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 1.11 ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.05 30 100.0 -- -- -- 12.8 -- 37327 -- -- 47.25
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.05 29.764 -- 1.34 -- 37317 1994 99.89 -- 0.2132 0.2108 0.2539 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.05 2.1013 -- 144 2507 0.3169 0.3267 -- 100.0
X Ray Diffraction 2.1013 2.1581 -- 140 2477 0.3026 0.3765 -- 100.0
X Ray Diffraction 2.1581 2.2215 -- 144 2444 0.2762 0.2876 -- 100.0
X Ray Diffraction 2.2215 2.2932 -- 134 2518 0.271 0.3087 -- 100.0
X Ray Diffraction 2.2932 2.3751 -- 135 2481 0.2655 0.3115 -- 100.0
X Ray Diffraction 2.3751 2.4702 -- 150 2509 0.2603 0.3439 -- 100.0
X Ray Diffraction 2.4702 2.5826 -- 127 2483 0.2638 0.3185 -- 100.0
X Ray Diffraction 2.5826 2.7186 -- 156 2517 0.263 0.3065 -- 100.0
X Ray Diffraction 2.7186 2.8888 -- 135 2493 0.2441 0.2871 -- 100.0
X Ray Diffraction 2.8888 3.1117 -- 148 2542 0.2494 0.2817 -- 100.0
X Ray Diffraction 3.1117 3.4244 -- 145 2506 0.2324 0.2569 -- 100.0
X Ray Diffraction 3.4244 3.919 -- 143 2562 0.1942 0.2415 -- 100.0
X Ray Diffraction 3.919 4.9338 -- 141 2578 0.1778 0.2342 -- 100.0
X Ray Diffraction 4.9338 29.7669 -- 152 2706 0.1673 0.204 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.009
f_dihedral_angle_d 14.626
f_chiral_restr 0.046
f_plane_restr 0.006
f_angle_d 1.053
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4380
Nucleic Acid Atoms 0
Heterogen Atoms 220
Solvent Atoms 30

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155)
XDS data reduction
SCALA data scaling
PHASER phasing