X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
Temperature 293.0
Details 30% PEG 8,000, 0.2 M sodium acetate, 0.1 sodium cacodylate pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 129.25 α = 90
b = 129.25 β = 90
c = 106.72 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-12-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97922 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.05 50 99.9 -- 0.084 -- 10.9 -- 63537 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.05 2.12 100.0 -- 0.755 3.8 10.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.05 29.809 -- 1.34 -- 63356 1986 99.89 -- 0.1671 0.1658 0.2068 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.05 2.1013 -- 138 4360 0.223 0.2919 -- 100.0
X Ray Diffraction 2.1013 2.1581 -- 138 4373 0.2004 0.2736 -- 100.0
X Ray Diffraction 2.1581 2.2215 -- 144 4363 0.1894 0.2254 -- 100.0
X Ray Diffraction 2.2215 2.2932 -- 141 4365 0.1837 0.2429 -- 100.0
X Ray Diffraction 2.2932 2.3751 -- 142 4373 0.1837 0.2338 -- 100.0
X Ray Diffraction 2.3751 2.4702 -- 144 4388 0.1797 0.2071 -- 100.0
X Ray Diffraction 2.4702 2.5826 -- 148 4381 0.1824 0.23 -- 100.0
X Ray Diffraction 2.5826 2.7186 -- 137 4359 0.1744 0.2146 -- 100.0
X Ray Diffraction 2.7186 2.8888 -- 140 4393 0.1754 0.2385 -- 100.0
X Ray Diffraction 2.8888 3.1117 -- 142 4382 0.1773 0.2241 -- 100.0
X Ray Diffraction 3.1117 3.4244 -- 141 4407 0.1727 0.2233 -- 100.0
X Ray Diffraction 3.4244 3.919 -- 143 4395 0.153 0.174 -- 100.0
X Ray Diffraction 3.919 4.9339 -- 143 4390 0.1303 0.1702 -- 100.0
X Ray Diffraction 4.9339 29.8126 -- 145 4441 0.1657 0.1973 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.054
f_plane_restr 0.005
f_angle_d 0.919
f_dihedral_angle_d 18.292
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6720
Nucleic Acid Atoms 0
Heterogen Atoms 120
Solvent Atoms 507

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
HKL-3000 data reduction
HKL-3000 data scaling
PHASER phasing