X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 289.0
Details 1M Na Citrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.39 α = 90
b = 62.1 β = 102.22
c = 118.47 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210r mirrors - Si ans Rh coatings 2015-08-07
Diffraction Radiation
Monochromator Protocol
Double Si with sagittaly bent second crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.55 45.9 99.8 0.087 -- -- 5.0 -- 21961 -- -- 48.15
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.55 2.66 98.4 0.857 -- -- 5.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.55 45.639 -- 1.36 -- 21961 1092 99.95 -- 0.1909 0.1883 0.2381 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.545 2.6608 -- 135 2576 0.274 0.3317 0.0 100.0
X Ray Diffraction 2.6608 2.8011 -- 147 2588 0.2423 0.2794 0.0 100.0
X Ray Diffraction 2.8011 2.9766 -- 134 2586 0.2242 0.2527 0.0 100.0
X Ray Diffraction 2.9766 3.2063 -- 125 2591 0.2279 0.2709 0.0 100.0
X Ray Diffraction 3.2063 3.5289 -- 137 2613 0.1959 0.2895 0.0 100.0
X Ray Diffraction 3.5289 4.0393 -- 131 2610 0.1629 0.2165 0.0 100.0
X Ray Diffraction 4.0393 5.088 -- 136 2636 0.1527 0.1979 0.0 100.0
X Ray Diffraction 5.088 45.6459 -- 147 2669 0.1824 0.2211 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 62.5979
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.477
f_plane_restr 0.003
f_bond_d 0.002
f_chiral_restr 0.036
f_dihedral_angle_d 14.741
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4043
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 113

Software

Software
Software Name Purpose
Aimless data scaling version: 0.3.11
PHASER phasing version: 2.6.1
PHENIX refinement version: 1.10.1_2155
PDB_EXTRACT data extraction version: 3.22
XDS data reduction