X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4.6
Temperature 293.0
Details 0.1 M sodium acetate, pH 4.6, 0.24 M ammonium acetate 26% (w/v) PEG-4000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 77.55 α = 90
b = 84.13 β = 111.8
c = 79.27 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2016-11-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-BM 1 APS 22-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.76 33.72 98.7 -- -- -- 2.5 -- 92183 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.762 33.717 -- 1.36 -- 92155 4612 98.74 -- 0.1786 0.1773 0.2035 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.762 1.7821 -- 150 2550 0.2791 0.3037 0.0 87.0
X Ray Diffraction 1.7821 1.803 -- 149 2796 0.2799 0.2968 0.0 95.0
X Ray Diffraction 1.803 1.825 -- 135 2867 0.26 0.3014 0.0 98.0
X Ray Diffraction 1.825 1.8481 -- 150 2902 0.2489 0.2534 0.0 98.0
X Ray Diffraction 1.8481 1.8724 -- 146 2943 0.2389 0.2711 0.0 99.0
X Ray Diffraction 1.8724 1.8981 -- 142 2903 0.2238 0.2588 0.0 98.0
X Ray Diffraction 1.8981 1.9252 -- 141 2895 0.2171 0.2614 0.0 99.0
X Ray Diffraction 1.9252 1.9539 -- 175 2929 0.2151 0.2634 0.0 99.0
X Ray Diffraction 1.9539 1.9845 -- 136 2910 0.2065 0.2137 0.0 99.0
X Ray Diffraction 1.9845 2.017 -- 167 2880 0.203 0.2069 0.0 100.0
X Ray Diffraction 2.017 2.0518 -- 153 2960 0.191 0.2068 0.0 99.0
X Ray Diffraction 2.0518 2.0891 -- 142 2918 0.1954 0.2132 0.0 99.0
X Ray Diffraction 2.0891 2.1292 -- 171 2919 0.1929 0.222 0.0 100.0
X Ray Diffraction 2.1292 2.1727 -- 171 2888 0.19 0.2175 0.0 99.0
X Ray Diffraction 2.1727 2.2199 -- 154 2952 0.1852 0.2054 0.0 99.0
X Ray Diffraction 2.2199 2.2716 -- 156 2927 0.1783 0.228 0.0 99.0
X Ray Diffraction 2.2716 2.3284 -- 157 2921 0.176 0.2339 0.0 100.0
X Ray Diffraction 2.3284 2.3913 -- 137 2957 0.1815 0.2185 0.0 100.0
X Ray Diffraction 2.3913 2.4616 -- 157 2930 0.1711 0.228 0.0 100.0
X Ray Diffraction 2.4616 2.5411 -- 171 2936 0.1776 0.2213 0.0 100.0
X Ray Diffraction 2.5411 2.6319 -- 153 2951 0.1753 0.2161 0.0 100.0
X Ray Diffraction 2.6319 2.7372 -- 156 2941 0.1811 0.2285 0.0 100.0
X Ray Diffraction 2.7372 2.8617 -- 157 2949 0.1787 0.2435 0.0 100.0
X Ray Diffraction 2.8617 3.0125 -- 151 2958 0.1708 0.2117 0.0 100.0
X Ray Diffraction 3.0125 3.2011 -- 159 2966 0.1659 0.1786 0.0 100.0
X Ray Diffraction 3.2011 3.448 -- 145 2974 0.1631 0.1713 0.0 100.0
X Ray Diffraction 3.448 3.7946 -- 150 2987 0.1575 0.1528 0.0 100.0
X Ray Diffraction 3.7946 4.3427 -- 159 2965 0.1473 0.1648 0.0 100.0
X Ray Diffraction 4.3427 5.4676 -- 170 2961 0.1368 0.1575 0.0 99.0
X Ray Diffraction 5.4676 33.7229 -- 152 3008 0.1717 0.1964 0.0 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 30.9047
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.003
f_angle_d 0.657
f_plane_restr 0.004
f_dihedral_angle_d 14.866
f_chiral_restr 0.045
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6761
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 1170

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10.1_2155
PDB_EXTRACT data extraction version: 3.22
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing