X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7
Temperature 293.0
Details 1.35 M ammonium sulfate, 0.09 M BIS-TRIS propane (pH 7.0) and 0.01 M calcium chloride dehydrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 224.79 α = 90
b = 149.74 β = 108.93
c = 95.03 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2016-06-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-D 1.0 APS 21-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.85 47.26 100.0 0.141 -- -- 7.7 -- 69398 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.85 2.92 -- 1.165 -- 1.7 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.85 47.26 -- 1.34 -- 69352 4813 99.93 -- 0.2171 0.2148 0.2477 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.85 2.8824 -- 163 2134 0.3381 0.3553 -- 100.0
X Ray Diffraction 2.8824 2.9163 -- 140 2166 0.321 0.3608 -- 100.0
X Ray Diffraction 2.9163 2.9518 -- 147 2147 0.3197 0.3518 -- 100.0
X Ray Diffraction 2.9518 2.9892 -- 160 2133 0.3226 0.3879 -- 100.0
X Ray Diffraction 2.9892 3.0285 -- 173 2110 0.3274 0.3533 -- 100.0
X Ray Diffraction 3.0285 3.07 -- 149 2201 0.3336 0.3823 -- 100.0
X Ray Diffraction 3.07 3.1139 -- 173 2098 0.3016 0.3716 -- 100.0
X Ray Diffraction 3.1139 3.1603 -- 142 2167 0.3062 0.3424 -- 100.0
X Ray Diffraction 3.1603 3.2097 -- 137 2149 0.277 0.3099 -- 100.0
X Ray Diffraction 3.2097 3.2623 -- 158 2170 0.2863 0.3098 -- 100.0
X Ray Diffraction 3.2623 3.3186 -- 169 2142 0.2855 0.3218 -- 100.0
X Ray Diffraction 3.3186 3.3789 -- 170 2118 0.2756 0.3037 -- 100.0
X Ray Diffraction 3.3789 3.4439 -- 145 2147 0.2739 0.2889 -- 100.0
X Ray Diffraction 3.4439 3.5141 -- 169 2154 0.258 0.3431 -- 100.0
X Ray Diffraction 3.5141 3.5905 -- 170 2119 0.2565 0.2824 -- 100.0
X Ray Diffraction 3.5905 3.674 -- 164 2174 0.2455 0.2781 -- 100.0
X Ray Diffraction 3.674 3.7658 -- 156 2139 0.2463 0.3035 -- 100.0
X Ray Diffraction 3.7658 3.8676 -- 146 2190 0.2185 0.2668 -- 100.0
X Ray Diffraction 3.8676 3.9814 -- 186 2106 0.2101 0.2567 -- 100.0
X Ray Diffraction 3.9814 4.1098 -- 171 2156 0.1871 0.2091 -- 100.0
X Ray Diffraction 4.1098 4.2566 -- 163 2122 0.1919 0.2414 -- 100.0
X Ray Diffraction 4.2566 4.4269 -- 145 2187 0.191 0.2424 -- 100.0
X Ray Diffraction 4.4269 4.6282 -- 150 2151 0.1788 0.2036 -- 100.0
X Ray Diffraction 4.6282 4.872 -- 170 2149 0.1725 0.2052 -- 100.0
X Ray Diffraction 4.872 5.1769 -- 135 2194 0.1675 0.2092 -- 100.0
X Ray Diffraction 5.1769 5.576 -- 178 2146 0.1902 0.2375 -- 100.0
X Ray Diffraction 5.576 6.1361 -- 162 2164 0.1982 0.2377 -- 100.0
X Ray Diffraction 6.1361 7.0215 -- 153 2171 0.1962 0.1986 -- 100.0
X Ray Diffraction 7.0215 8.8369 -- 186 2163 0.1691 0.1932 -- 100.0
X Ray Diffraction 8.8369 47.2668 -- 183 2172 0.1578 0.1725 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_angle_d 0.984
f_dihedral_angle_d 11.668
f_chiral_restr 0.04
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11148
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 83

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
iMOSFLM data reduction
SCALA data scaling
PHASER phasing