X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 277.0
Details 0.1M imidazole, 1M NaAcetate, 20% glycerol pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.25 α = 90
b = 97.25 β = 90
c = 81.08 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2008-08-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-F 0.979 APS 21-ID-F

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 42.11 97.7 -- -- -- 13.0 -- 18965 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.301 42.109 -- 1.35 -- 18965 1892 97.62 -- 0.1936 0.1893 0.2327 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3011 2.3586 -- 119 1039 0.2993 0.3465 -- 85.0
X Ray Diffraction 2.3586 2.4224 -- 122 1125 0.3012 0.3151 -- 90.0
X Ray Diffraction 2.4224 2.4937 -- 135 1188 0.2732 0.3191 -- 95.0
X Ray Diffraction 2.4937 2.5741 -- 131 1214 0.2537 0.3203 -- 99.0
X Ray Diffraction 2.5741 2.6661 -- 136 1248 0.2403 0.2666 -- 100.0
X Ray Diffraction 2.6661 2.7729 -- 132 1225 0.2341 0.3089 -- 100.0
X Ray Diffraction 2.7729 2.899 -- 136 1252 0.2008 0.252 -- 100.0
X Ray Diffraction 2.899 3.0518 -- 134 1250 0.1958 0.242 -- 100.0
X Ray Diffraction 3.0518 3.243 -- 146 1262 0.1961 0.2319 -- 100.0
X Ray Diffraction 3.243 3.4932 -- 136 1232 0.1874 0.2416 -- 100.0
X Ray Diffraction 3.4932 3.8446 -- 140 1258 0.1636 0.2124 -- 100.0
X Ray Diffraction 3.8446 4.4004 -- 134 1250 0.1537 0.2158 -- 100.0
X Ray Diffraction 4.4004 5.542 -- 146 1250 0.1556 0.1857 -- 100.0
X Ray Diffraction 5.542 42.1158 -- 145 1280 0.1719 0.1906 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.802
f_plane_restr 0.006
f_bond_d 0.013
f_chiral_restr 0.056
f_angle_d 1.311
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2220
Nucleic Acid Atoms 0
Heterogen Atoms 23
Solvent Atoms 131

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)