X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 6.5
Temperature 277.0
Details imidazole 0,1M - NaAcetate 1M - pH6,5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.54 α = 90
b = 97.54 β = 90
c = 81.1 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 93
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2005-06-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-F 0.979 APS 21-ID-F

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.15 37.46 99.5 -- -- -- 13.5 -- 23887 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.149 37.46 -- 1.34 -- 23887 1997 99.81 -- 0.1842 0.1813 0.2167 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1495 2.2032 -- 138 1533 0.2767 0.295 -- 99.0
X Ray Diffraction 2.2032 2.2628 -- 142 1540 0.2668 0.2737 -- 100.0
X Ray Diffraction 2.2628 2.3294 -- 141 1549 0.2323 0.2641 -- 100.0
X Ray Diffraction 2.3294 2.4046 -- 143 1567 0.2143 0.2971 -- 100.0
X Ray Diffraction 2.4046 2.4905 -- 146 1562 0.2177 0.2773 -- 100.0
X Ray Diffraction 2.4905 2.5902 -- 144 1540 0.213 0.2674 -- 100.0
X Ray Diffraction 2.5902 2.708 -- 146 1591 0.2216 0.2568 -- 100.0
X Ray Diffraction 2.708 2.8508 -- 142 1526 0.2042 0.2365 -- 100.0
X Ray Diffraction 2.8508 3.0293 -- 139 1581 0.2002 0.2345 -- 100.0
X Ray Diffraction 3.0293 3.2631 -- 145 1574 0.1967 0.2533 -- 100.0
X Ray Diffraction 3.2631 3.5912 -- 139 1559 0.1827 0.2465 -- 100.0
X Ray Diffraction 3.5912 4.1103 -- 143 1579 0.1594 0.1916 -- 100.0
X Ray Diffraction 4.1103 5.1764 -- 141 1578 0.1492 0.1797 -- 100.0
X Ray Diffraction 5.1764 37.4653 -- 148 1611 0.1598 0.1706 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.003
f_dihedral_angle_d 13.635
f_bond_d 0.009
f_chiral_restr 0.056
f_plane_restr 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2231
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 123

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
HKL-2000 data reduction
HKL-2000 data scaling
MOLREP phasing