X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 298.0
Details PEG-6000 10 to 30 % w/v and sodium citrate 0.1M at pH 4.7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.62 α = 90
b = 54.66 β = 90
c = 63.72 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
2 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2016-04-28
PIXEL DECTRIS PILATUS 6M -- 2016-01-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
SYNCHROTRON ESRF BEAMLINE ID23-1 1.0597 ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.83 41.49 98.1 0.107 -- -- 6.4 -- 4184 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.83 2.931 92.77 -- -- 2.41 -- 385

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.83 41.486 -- 0.15 -- 4184 341 98.56 -- 0.2035 0.2002 0.2734 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8298 3.5649 -- 174 3579 0.2464 0.3684 -- 98.0
X Ray Diffraction 3.5649 41.4909 -- 167 3634 0.1818 0.2396 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.009
f_angle_d 1.15
f_chiral_restr 0.064
f_plane_restr 0.006
f_dihedral_angle_d 15.562
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1093
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 13

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
XDS data scaling
Sir2014 phasing