X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 295.15
Details 0.1 M Hepes pH 7.0, 30% PEG 6000;

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 40.93 α = 90
b = 159.05 β = 95.17
c = 100.61 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-06-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-D 1.03320 APS 23-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.07 37.88 94.8 -- 0.049 -- 2.1 -- 73937 -- -- 48.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.07 2.11 91.4 0.456 -- 2.1 1.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.07 37.88 -- 1.36 -- 73905 3696 94.6 -- 0.18 0.178 0.216 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0667 2.0939 -- 132 2495 0.2697 0.2814 -- 88.0
X Ray Diffraction 2.0939 2.1226 -- 137 2614 0.2488 0.284 -- 92.0
X Ray Diffraction 2.1226 2.1529 -- 144 2729 0.2404 0.2828 -- 93.0
X Ray Diffraction 2.1529 2.185 -- 136 2592 0.2354 0.2745 -- 93.0
X Ray Diffraction 2.185 2.2191 -- 137 2615 0.2267 0.2728 -- 93.0
X Ray Diffraction 2.2191 2.2555 -- 144 2718 0.2332 0.2879 -- 95.0
X Ray Diffraction 2.2555 2.2944 -- 146 2767 0.2109 0.2561 -- 96.0
X Ray Diffraction 2.2944 2.3361 -- 141 2677 0.2106 0.2743 -- 95.0
X Ray Diffraction 2.3361 2.381 -- 144 2750 0.2029 0.2326 -- 96.0
X Ray Diffraction 2.381 2.4296 -- 145 2733 0.1904 0.2277 -- 96.0
X Ray Diffraction 2.4296 2.4825 -- 141 2700 0.1941 0.2639 -- 96.0
X Ray Diffraction 2.4825 2.5402 -- 147 2780 0.1863 0.2154 -- 97.0
X Ray Diffraction 2.5402 2.6037 -- 142 2715 0.1873 0.2425 -- 96.0
X Ray Diffraction 2.6037 2.6741 -- 144 2726 0.1741 0.2229 -- 96.0
X Ray Diffraction 2.6741 2.7528 -- 145 2759 0.1835 0.2232 -- 95.0
X Ray Diffraction 2.7528 2.8416 -- 138 2635 0.1889 0.2515 -- 94.0
X Ray Diffraction 2.8416 2.9431 -- 147 2764 0.201 0.2488 -- 95.0
X Ray Diffraction 2.9431 3.0609 -- 143 2732 0.1953 0.2375 -- 97.0
X Ray Diffraction 3.0609 3.2001 -- 147 2793 0.1902 0.2076 -- 97.0
X Ray Diffraction 3.2001 3.3687 -- 146 2753 0.1817 0.2155 -- 96.0
X Ray Diffraction 3.3687 3.5797 -- 139 2657 0.1706 0.2359 -- 94.0
X Ray Diffraction 3.5797 3.8558 -- 144 2739 0.1639 0.195 -- 95.0
X Ray Diffraction 3.8558 4.2434 -- 141 2678 0.1542 0.1951 -- 94.0
X Ray Diffraction 4.2434 4.8563 -- 143 2715 0.1374 0.1645 -- 95.0
X Ray Diffraction 4.8563 6.1143 -- 143 2721 0.1645 0.1968 -- 94.0
X Ray Diffraction 6.1143 37.8898 -- 140 2652 0.1872 0.213 -- 91.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_dihedral_angle_d 12.776
f_chiral_restr 0.058
f_bond_d 0.008
f_angle_d 0.879
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8404
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 209

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
HKL-2000 data reduction version: Version 2.3.10
HKL-2000 data scaling version: Version 2.3.10
PHASER phasing version: 2.6.1