X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 298.0
Details 112.5mM Mes pH 6.5, 35% glycerol ethoxylate, 180 mM ammonium acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 64.91 α = 90
b = 67.35 β = 90
c = 333.54 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2016-07-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.69 333.54 100.0 0.086 -- -- 6.2 -- 82464 -- -- 28.12
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.69 1.73 100.0 1.501 -- -- 6.3 6056

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.69 46.74 -- 0.0 -- 78803 3961 95.7 -- 0.241 0.24 0.265 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.69 1.73 -- 297 5704 0.3151 0.3294 0.0 99.16
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 49.36
Anisotropic B[1][1] 5.0184
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -7.116
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 2.0976
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.01
t_angle_deg 0.98
t_other_torsion 17.68
t_omega_torsion 3.15
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5491
Nucleic Acid Atoms 0
Heterogen Atoms 120
Solvent Atoms 240

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.3
Aimless data scaling version: 0.5.26
PDB_EXTRACT data extraction version: 3.23
XDS data reduction
PHASER phasing
XDS data scaling