X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 293.0
Details 0.1 M BIS-TRIS PH 5.5, 23-25% W/V PEG 3350, AND 200 MM AMMONIUM ACETATE

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 159 α = 90
b = 68.7 β = 102.8
c = 227.2 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 2M -- 2015-06-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.1 50 98.6 -- 0.02 -- 3.5 -- 43333 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.1 3.23 98.5 -- 1.0 1.1 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 221.55 -- -- -- 41189 2144 98.58 -- 0.24293 0.24113 0.27753 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.181 -- 154 3007 0.378 0.331 -- 98.32
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 70.008
Anisotropic B[1][1] -0.99
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -1.32
Anisotropic B[2][2] 3.85
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.05
RMS Deviations
Key Refinement Restraint Deviation
r_angle_other_deg 0.886
r_angle_refined_deg 0.895
r_gen_planes_refined 0.003
r_dihedral_angle_3_deg 11.729
r_long_range_B_other 2.847
r_chiral_restr 0.053
r_gen_planes_other 0.001
r_mcbond_other 0.955
r_scangle_other 1.297
r_dihedral_angle_2_deg 31.193
r_bond_refined_d 0.006
r_scbond_it 0.71
r_scbond_other 0.71
r_dihedral_angle_1_deg 4.919
r_mcangle_other 1.777
r_long_range_B_refined 2.847
r_dihedral_angle_4_deg 10.127
r_mcbond_it 0.955
r_mcangle_it 1.777
r_bond_other_d 0.001
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13594
Nucleic Acid Atoms 3350
Heterogen Atoms 117
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
XDS data reduction
XSCALE data scaling
PHASER phasing