X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details Tris-Bicine pH 8.5, amino acids, PEG 4000, glycerol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 85.92 α = 90
b = 159.13 β = 90
c = 88.16 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 2M -- 2015-12-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.96598 ESRF MASSIF-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.78 48.67 98.9 0.057 -- -- 4.0 -- 114314 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.78 1.85 93.5 0.824 -- 1.7 4.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.783 45.45 -- 1.35 -- 114235 5735 98.82 -- 0.1503 0.1488 0.1786 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7833 1.8036 -- 159 2931 0.2912 0.3513 -- 81.0
X Ray Diffraction 1.8036 1.8248 -- 187 3607 0.2629 0.271 -- 100.0
X Ray Diffraction 1.8248 1.8471 -- 202 3573 0.2499 0.2827 -- 100.0
X Ray Diffraction 1.8471 1.8705 -- 188 3636 0.2397 0.2735 -- 100.0
X Ray Diffraction 1.8705 1.8951 -- 199 3590 0.2304 0.2554 -- 100.0
X Ray Diffraction 1.8951 1.921 -- 202 3588 0.2236 0.2676 -- 100.0
X Ray Diffraction 1.921 1.9485 -- 189 3592 0.2273 0.2327 -- 99.0
X Ray Diffraction 1.9485 1.9776 -- 180 3590 0.2147 0.2676 -- 99.0
X Ray Diffraction 1.9776 2.0085 -- 193 3618 0.1856 0.2158 -- 99.0
X Ray Diffraction 2.0085 2.0414 -- 195 3563 0.1705 0.2117 -- 99.0
X Ray Diffraction 2.0414 2.0766 -- 195 3595 0.1636 0.2079 -- 99.0
X Ray Diffraction 2.0766 2.1144 -- 178 3622 0.1578 0.193 -- 100.0
X Ray Diffraction 2.1144 2.155 -- 200 3651 0.1567 0.1849 -- 100.0
X Ray Diffraction 2.155 2.199 -- 207 3614 0.1478 0.1876 -- 100.0
X Ray Diffraction 2.199 2.2468 -- 199 3597 0.1457 0.1997 -- 100.0
X Ray Diffraction 2.2468 2.2991 -- 185 3645 0.1497 0.1937 -- 100.0
X Ray Diffraction 2.2991 2.3566 -- 177 3649 0.145 0.1815 -- 100.0
X Ray Diffraction 2.3566 2.4203 -- 223 3609 0.1482 0.1833 -- 100.0
X Ray Diffraction 2.4203 2.4915 -- 185 3626 0.1455 0.1974 -- 100.0
X Ray Diffraction 2.4915 2.5719 -- 192 3665 0.1477 0.1546 -- 100.0
X Ray Diffraction 2.5719 2.6638 -- 193 3642 0.1426 0.1635 -- 100.0
X Ray Diffraction 2.6638 2.7705 -- 191 3643 0.1463 0.1857 -- 100.0
X Ray Diffraction 2.7705 2.8966 -- 158 3687 0.1454 0.1677 -- 100.0
X Ray Diffraction 2.8966 3.0492 -- 201 3623 0.1439 0.1671 -- 98.0
X Ray Diffraction 3.0492 3.2402 -- 175 3690 0.1415 0.1744 -- 100.0
X Ray Diffraction 3.2402 3.4903 -- 175 3668 0.1423 0.1887 -- 99.0
X Ray Diffraction 3.4903 3.8414 -- 196 3705 0.1249 0.144 -- 99.0
X Ray Diffraction 3.8414 4.3969 -- 207 3686 0.1133 0.1348 -- 99.0
X Ray Diffraction 4.3969 5.538 -- 207 3713 0.1276 0.1643 -- 99.0
X Ray Diffraction 5.538 45.4648 -- 197 3882 0.1619 0.1817 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.008
f_angle_d 1.009
f_chiral_restr 0.062
f_bond_d 0.01
f_dihedral_angle_d 20.651
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7160
Nucleic Acid Atoms 0
Heterogen Atoms 101
Solvent Atoms 761

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
XDS data reduction
XDS data scaling
PHASER phasing