X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 291.0
Details PEG 6000 20% Hepes 0.1M DMSO 5%

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 91.57 α = 90
b = 91.57 β = 90
c = 133.09 γ = 90
Symmetry
Space Group I 4 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2016-12-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 50 99.9 -- 0.09 -- 8.53 -- 45487 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.59 100.0 -- 0.504 3.3 8.8 7233

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.5 50.0 -- 1.36 -- 45476 2275 99.89 -- 0.1519 0.1511 0.1674 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4994 1.532 -- 139 2638 0.2169 0.2382 -- 100.0
X Ray Diffraction 1.532 1.5677 -- 140 2646 0.2017 0.2193 -- 100.0
X Ray Diffraction 1.5677 1.6069 -- 141 2694 0.1853 0.2103 -- 100.0
X Ray Diffraction 1.6069 1.6503 -- 140 2645 0.182 0.1919 -- 100.0
X Ray Diffraction 1.6503 1.6989 -- 140 2673 0.1651 0.1941 -- 100.0
X Ray Diffraction 1.6989 1.7537 -- 142 2695 0.1505 0.1862 -- 100.0
X Ray Diffraction 1.7537 1.8164 -- 140 2655 0.1504 0.188 -- 100.0
X Ray Diffraction 1.8164 1.8892 -- 140 2671 0.1472 0.1778 -- 100.0
X Ray Diffraction 1.8892 1.9751 -- 142 2695 0.144 0.1864 -- 100.0
X Ray Diffraction 1.9751 2.0793 -- 142 2684 0.1477 0.1613 -- 100.0
X Ray Diffraction 2.0793 2.2095 -- 142 2699 0.1416 0.1522 -- 100.0
X Ray Diffraction 2.2095 2.3801 -- 142 2704 0.142 0.1618 -- 100.0
X Ray Diffraction 2.3801 2.6196 -- 142 2705 0.1413 0.1604 -- 100.0
X Ray Diffraction 2.6196 2.9986 -- 145 2744 0.1516 0.1478 -- 100.0
X Ray Diffraction 2.9986 3.7777 -- 145 2749 0.1472 0.1693 -- 100.0
X Ray Diffraction 3.7777 45.8073 -- 153 2904 0.1461 0.1496 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.074
f_dihedral_angle_d 24.137
f_bond_d 0.007
f_plane_restr 0.006
f_angle_d 0.981
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1828
Nucleic Acid Atoms 0
Heterogen Atoms 81
Solvent Atoms 220

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
XDS data scaling
PHASER phasing