X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Small Tubes
Temperature 293.0
Details Tris, HCl, ammonium sulfate, CO

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 37.87 α = 90
b = 46.88 β = 90
c = 84.67 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 293
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2016-02-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 42.35 100.0 0.7947 -- -- 25.3 -- 14552 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.83 100.0 0.9256 -- 0.36 18.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 42.333 -- 1.34 -- 14539 1454 99.88 -- 0.2006 0.1948 0.2532 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.8644 -- 141 1272 0.3131 0.344 -- 99.0
X Ray Diffraction 1.8644 1.939 -- 143 1284 0.2601 0.3272 -- 100.0
X Ray Diffraction 1.939 2.0272 -- 141 1278 0.2355 0.2867 -- 100.0
X Ray Diffraction 2.0272 2.1341 -- 143 1284 0.2127 0.2931 -- 100.0
X Ray Diffraction 2.1341 2.2678 -- 144 1293 0.2042 0.2693 -- 100.0
X Ray Diffraction 2.2678 2.4429 -- 144 1298 0.1888 0.2537 -- 100.0
X Ray Diffraction 2.4429 2.6887 -- 147 1313 0.1813 0.261 -- 100.0
X Ray Diffraction 2.6887 3.0777 -- 146 1314 0.174 0.2331 -- 100.0
X Ray Diffraction 3.0777 3.8771 -- 147 1338 0.1564 0.2204 -- 100.0
X Ray Diffraction 3.8771 42.3444 -- 158 1411 0.1785 0.2147 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.017
f_angle_d 1.324
f_dihedral_angle_d 8.106
f_plane_restr 0.009
f_chiral_restr 0.065
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1225
Nucleic Acid Atoms 0
Heterogen Atoms 55
Solvent Atoms 171

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
DIALS data reduction
cctbx.prime data scaling
PHASER phasing