X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7.5
Temperature 291.0
Details 33% PEG 6000 100mM Tris pH 7.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 56.94 α = 90
b = 36.5 β = 116.65
c = 60.7 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F Mirrors 2016-11-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 0.999 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.36 54.25 95.3 0.072 -- 13.3 6.2 -- 45812 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.36 1.39 90.2 1.115 -- 1.4 5.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.36 54.25 -- 0.0 -- 43449 2362 95.33 -- 0.146 0.1443 0.175 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.362 1.397 -- 162 3043 0.3 0.294 0.0 91.18
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 18.567
Anisotropic B[1][1] 0.45
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.37
Anisotropic B[2][2] 0.44
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.34
RMS Deviations
Key Refinement Restraint Deviation
r_sphericity_bonded 7.515
r_bond_refined_d 0.015
r_gen_planes_other 0.002
r_dihedral_angle_2_deg 28.119
r_dihedral_angle_3_deg 12.7
r_dihedral_angle_1_deg 6.386
r_rigid_bond_restr 2.11
r_angle_other_deg 2.604
r_gen_planes_refined 0.011
r_bond_other_d 0.002
r_dihedral_angle_4_deg 25.496
r_chiral_restr 0.09
r_sphericity_free 22.279
r_angle_refined_deg 2.179
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1628
Nucleic Acid Atoms 0
Heterogen Atoms 86
Solvent Atoms 214

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
XDS data reduction
Aimless data scaling
PHASER phasing