X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 60% v/v Tacsimate pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.56 α = 90
b = 83.56 β = 90
c = 98.81 γ = 120
Symmetry
Space Group P 32 1 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-04-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 0.92019 Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.94 49.41 100.0 0.101 -- -- 21.57 -- 16177 -- 1.7 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.94 2.99 100.0 1.658 -- 1.7 21.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.94 32.938 -- 1.33 -- 16177 789 98.56 -- 0.1924 0.1912 0.2169 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.94 3.1241 -- 149 2488 0.4107 0.4682 -- 97.0
X Ray Diffraction 3.1241 3.3651 -- 119 2571 0.2268 0.2567 -- 98.0
X Ray Diffraction 3.3651 3.7033 -- 152 2538 0.2101 0.2159 -- 99.0
X Ray Diffraction 3.7033 4.2383 -- 148 2551 0.2007 0.2014 -- 99.0
X Ray Diffraction 4.2383 5.3361 -- 90 2616 0.1647 0.2228 -- 99.0
X Ray Diffraction 5.3361 32.94 -- 131 2624 0.1574 0.1721 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.721
f_chiral_restr 0.07
f_bond_d 0.009
f_plane_restr 0.01
f_dihedral_angle_d 18.285
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 882
Heterogen Atoms 4
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (dev_2219: ???)
xia2 data reduction
xia2 data scaling
PHASER phasing