X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details The crystallisation condition is 10% w/v PEG3350 and 0.1 M sodium malonate.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 70.81 α = 90
b = 76.95 β = 96.48
c = 118.86 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 300K -- 2015-12-14
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.58 29.42 89.7 0.069 -- -- 2.1 -- 318978 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.58 29.423 -- 0.03 -- 155035 15234 89.75 -- 0.194 0.1927 0.2178 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5797 1.5976 -- 446 8092 0.3502 0.3938 -- 76.0
X Ray Diffraction 1.5976 1.6164 -- 444 8735 0.3291 0.3595 -- 80.0
X Ray Diffraction 1.6164 1.6361 -- 444 8967 0.3329 0.3444 -- 82.0
X Ray Diffraction 1.6361 1.6568 -- 446 8889 0.3269 0.3457 -- 82.0
X Ray Diffraction 1.6568 1.6786 -- 496 8864 0.3246 0.3238 -- 82.0
X Ray Diffraction 1.6786 1.7016 -- 470 8991 0.3166 0.3528 -- 84.0
X Ray Diffraction 1.7016 1.7259 -- 571 10141 0.3167 0.3174 -- 93.0
X Ray Diffraction 1.7259 1.7517 -- 526 10052 0.3023 0.3203 -- 94.0
X Ray Diffraction 1.7517 1.779 -- 512 10009 0.3101 0.3513 -- 93.0
X Ray Diffraction 1.779 1.8082 -- 542 10112 0.2861 0.3209 -- 93.0
X Ray Diffraction 1.8082 1.8394 -- 566 10053 0.2763 0.294 -- 93.0
X Ray Diffraction 1.8394 1.8728 -- 453 9980 0.2656 0.2749 -- 92.0
X Ray Diffraction 1.8728 1.9088 -- 506 9957 0.2589 0.2883 -- 91.0
X Ray Diffraction 1.9088 1.9478 -- 542 9738 0.2404 0.2976 -- 91.0
X Ray Diffraction 1.9478 1.9901 -- 473 9638 0.2361 0.2596 -- 89.0
X Ray Diffraction 1.9901 2.0364 -- 512 9019 0.2208 0.2598 -- 84.0
X Ray Diffraction 2.0364 2.0873 -- 461 10375 0.2206 0.2709 -- 94.0
X Ray Diffraction 2.0873 2.1438 -- 521 10246 0.2053 0.2244 -- 94.0
X Ray Diffraction 2.1438 2.2068 -- 522 10101 0.1846 0.2306 -- 94.0
X Ray Diffraction 2.2068 2.278 -- 477 10136 0.1844 0.2292 -- 93.0
X Ray Diffraction 2.278 2.3594 -- 547 10038 0.176 0.2151 -- 93.0
X Ray Diffraction 2.3594 2.4538 -- 490 9997 0.1764 0.2181 -- 93.0
X Ray Diffraction 2.4538 2.5655 -- 558 9741 0.1684 0.1903 -- 90.0
X Ray Diffraction 2.5655 2.7006 -- 540 9663 0.17 0.2035 -- 90.0
X Ray Diffraction 2.7006 2.8697 -- 508 10439 0.1743 0.1979 -- 96.0
X Ray Diffraction 2.8697 3.091 -- 568 10287 0.1702 0.1961 -- 95.0
X Ray Diffraction 3.091 3.4017 -- 514 10024 0.1583 0.1789 -- 93.0
X Ray Diffraction 3.4017 3.893 -- 488 9376 0.1457 0.1588 -- 87.0
X Ray Diffraction 3.893 4.9011 -- 563 10203 0.1323 0.1514 -- 95.0
X Ray Diffraction 4.9011 29.4282 -- 528 9645 0.1495 0.1675 -- 89.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 16.764
f_bond_d 0.009
f_chiral_restr 0.066
f_plane_restr 0.007
f_angle_d 1.05
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10145
Nucleic Acid Atoms 0
Heterogen Atoms 49
Solvent Atoms 1406

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
MOSFLM data reduction
Aimless data scaling
PHASER phasing