X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 5
Temperature 291.0
Details 0.2 M NH4Cl, 1 mM CaCl2 and 20% PEG 3350 (w/v), pH 5.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.84 α = 90
b = 137.17 β = 90
c = 147.56 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-08-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.99998 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.21 62.2 99.7 0.077 -- -- 6.3 -- 27112 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.21 3.325 99.59 0.1578 -- 4.37 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.21 62.195 -- 1.34 -- 27058 1365 99.53 -- 0.2288 0.2274 0.2548 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.21 3.3248 -- 134 2521 0.3449 0.368 -- 100.0
X Ray Diffraction 3.3248 3.4579 -- 122 2545 0.2819 0.2875 -- 100.0
X Ray Diffraction 3.4579 3.6152 -- 157 2534 0.2558 0.2777 -- 100.0
X Ray Diffraction 3.6152 3.8058 -- 176 2503 0.2584 0.2777 -- 100.0
X Ray Diffraction 3.8058 4.0442 -- 137 2517 0.253 0.2724 -- 100.0
X Ray Diffraction 4.0442 4.3564 -- 130 2552 0.2184 0.2735 -- 99.0
X Ray Diffraction 4.3564 4.7947 -- 126 2595 0.1809 0.1955 -- 100.0
X Ray Diffraction 4.7947 5.4881 -- 118 2579 0.1888 0.2084 -- 99.0
X Ray Diffraction 5.4881 6.913 -- 131 2614 0.2213 0.2603 -- 99.0
X Ray Diffraction 6.913 62.2068 -- 134 2733 0.2288 0.2535 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.06
f_angle_d 0.686
f_bond_d 0.002
f_plane_restr 0.003
f_dihedral_angle_d 10.461
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10237
Nucleic Acid Atoms 0
Heterogen Atoms 173
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11_2567: ???)
MOSFLM data reduction
Aimless data scaling
PHASER phasing