X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Batch Mode
pH 5.5
Temperature 293.0
Details 2-26% (V/V) POLYETHYLENE GLYCOL 500 DME, 0.1 M NA-CITRATE PH 5.5, 10 MM NAF

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 40.59 α = 109.41
b = 84.06 β = 101.4
c = 85.96 γ = 101.37
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2015-03-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I24 0.979 Diamond I24

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 41 96.8 0.088 -- -- 3.4 -- 51576 -- -- 40.28
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.5 96.3 0.8 -- 1.3 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.17 40.952 -- 1.97 -- 51554 2562 96.74 -- 0.2179 0.2166 0.2429 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.17 2.2117 -- 146 2694 0.2884 0.329 -- 96.0
X Ray Diffraction 2.2117 2.2569 -- 160 2725 0.3028 0.3312 -- 96.0
X Ray Diffraction 2.2569 2.306 -- 146 2649 0.2884 0.3517 -- 97.0
X Ray Diffraction 2.306 2.3596 -- 129 2710 0.2895 0.3162 -- 95.0
X Ray Diffraction 2.3596 2.4186 -- 122 2711 0.2734 0.346 -- 96.0
X Ray Diffraction 2.4186 2.484 -- 123 2717 0.2658 0.2876 -- 96.0
X Ray Diffraction 2.484 2.5571 -- 105 2763 0.2478 0.3083 -- 96.0
X Ray Diffraction 2.5571 2.6396 -- 161 2713 0.2294 0.3175 -- 97.0
X Ray Diffraction 2.6396 2.7339 -- 156 2699 0.2305 0.2599 -- 97.0
X Ray Diffraction 2.7339 2.8433 -- 175 2688 0.2245 0.252 -- 97.0
X Ray Diffraction 2.8433 2.9727 -- 161 2730 0.2075 0.2181 -- 98.0
X Ray Diffraction 2.9727 3.1294 -- 145 2759 0.2006 0.2211 -- 98.0
X Ray Diffraction 3.1294 3.3254 -- 147 2734 0.1946 0.2392 -- 98.0
X Ray Diffraction 3.3254 3.582 -- 154 2778 0.2049 0.2072 -- 98.0
X Ray Diffraction 3.582 3.9422 -- 161 2725 0.1979 0.2591 -- 98.0
X Ray Diffraction 3.9422 4.512 -- 151 2728 0.2108 0.2202 -- 97.0
X Ray Diffraction 4.512 5.6823 -- 122 2717 0.203 0.2084 -- 97.0
X Ray Diffraction 5.6823 40.9596 -- 98 2752 0.1984 0.2037 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.037
f_dihedral_angle_d 9.376
f_angle_d 0.421
f_bond_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6399
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 278

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
xia2 data reduction
Aimless data scaling
PHASER phasing