X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 291.0
Details 0.1 M Ammonium acetate, 0.1 M BIS-TRIS pH 5.5, 17% w/v Polyethylene glycol 10,000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 32.73 α = 90
b = 80.64 β = 95.23
c = 59.31 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2017-02-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 0.976251 ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 47.7 99.8 -- -- -- 5.7 -- 33675 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.73 99.7 0.466 -- 3.0 5.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 47.648 -- 1.35 -- 33646 1683 99.72 -- 0.168 0.1665 0.1947 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.7501 -- 134 2646 0.227 0.2799 -- 100.0
X Ray Diffraction 1.7501 1.8065 -- 140 2669 0.2087 0.2597 -- 100.0
X Ray Diffraction 1.8065 1.8711 -- 138 2615 0.1944 0.2182 -- 100.0
X Ray Diffraction 1.8711 1.946 -- 136 2668 0.1947 0.2496 -- 100.0
X Ray Diffraction 1.946 2.0346 -- 151 2673 0.1884 0.2404 -- 100.0
X Ray Diffraction 2.0346 2.1419 -- 132 2639 0.1824 0.238 -- 100.0
X Ray Diffraction 2.1419 2.2761 -- 158 2634 0.1769 0.2215 -- 100.0
X Ray Diffraction 2.2761 2.4518 -- 151 2648 0.1755 0.2111 -- 100.0
X Ray Diffraction 2.4518 2.6985 -- 139 2685 0.1721 0.1905 -- 100.0
X Ray Diffraction 2.6985 3.0889 -- 121 2688 0.1722 0.2106 -- 100.0
X Ray Diffraction 3.0889 3.8914 -- 131 2680 0.1505 0.1883 -- 100.0
X Ray Diffraction 3.8914 47.6664 -- 152 2718 0.1428 0.1387 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.813
f_plane_restr 0.004
f_bond_d 0.006
f_dihedral_angle_d 16.252
f_chiral_restr 0.051
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2302
Nucleic Acid Atoms 0
Heterogen Atoms 32
Solvent Atoms 286

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
Aimless data scaling
PHASER phasing