X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 100 mM Tris pH 8.5 and 16% PEG 6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 139.2 α = 90
b = 45.19 β = 122.14
c = 83.28 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2016-06-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 42.2 94.1 0.073 -- -- 7.0 -- 66575 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.55 88.2 0.566 -- 4.2 6.9 6208

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.498 42.197 -- 1.16 -- 66575 6452 93.65 -- 0.1819 0.1807 0.2053 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.498 1.5155 -- 186 3486 -- 0.391 -- 79.0
X Ray Diffraction 1.5155 1.5333 -- 207 3979 -- 0.3252 -- 91.0
X Ray Diffraction 1.5333 1.552 -- 210 3969 0.2665 0.2762 -- 91.0
X Ray Diffraction 1.552 1.5717 -- 210 3958 0.2683 0.3116 -- 92.0
X Ray Diffraction 1.5717 1.5924 -- 211 4011 0.2479 0.2731 -- 91.0
X Ray Diffraction 1.5924 1.6142 -- 213 4072 0.239 0.2644 -- 93.0
X Ray Diffraction 1.6142 1.6373 -- 214 4083 0.2115 0.2304 -- 93.0
X Ray Diffraction 1.6373 1.6617 -- 217 4107 0.1904 0.2182 -- 94.0
X Ray Diffraction 1.6617 1.6877 -- 215 4044 0.1954 0.214 -- 94.0
X Ray Diffraction 1.6877 1.7153 -- 218 4155 0.1883 0.2519 -- 95.0
X Ray Diffraction 1.7153 1.7449 -- 219 4233 0.1776 0.2153 -- 95.0
X Ray Diffraction 1.7449 1.7766 -- 211 4089 0.1852 0.2086 -- 95.0
X Ray Diffraction 1.7766 1.8108 -- 223 4246 0.182 0.2275 -- 96.0
X Ray Diffraction 1.8108 1.8478 -- 216 4107 0.1749 0.2044 -- 96.0
X Ray Diffraction 1.8478 1.8879 -- 219 4203 0.179 0.198 -- 95.0
X Ray Diffraction 1.8879 1.9319 -- 216 4115 0.175 0.2326 -- 95.0
X Ray Diffraction 1.9319 1.9802 -- 210 4063 0.1746 0.2118 -- 92.0
X Ray Diffraction 1.9802 2.0337 -- 185 3598 0.1729 0.1965 -- 83.0
X Ray Diffraction 2.0337 2.0936 -- 221 4231 0.1648 0.175 -- 97.0
X Ray Diffraction 2.0936 2.1611 -- 227 4297 0.1711 0.1744 -- 97.0
X Ray Diffraction 2.1611 2.2384 -- 225 4208 0.1782 0.2334 -- 97.0
X Ray Diffraction 2.2384 2.328 -- 220 4220 0.1782 0.2001 -- 97.0
X Ray Diffraction 2.328 2.4339 -- 228 4292 0.1829 0.1926 -- 97.0
X Ray Diffraction 2.4339 2.5622 -- 218 4220 0.1861 0.2464 -- 97.0
X Ray Diffraction 2.5622 2.7227 -- 227 4263 0.1825 0.2253 -- 97.0
X Ray Diffraction 2.7227 2.9329 -- 221 4229 0.1843 0.2222 -- 97.0
X Ray Diffraction 2.9329 3.228 -- 217 4203 0.1748 0.1969 -- 95.0
X Ray Diffraction 3.228 3.6948 -- 201 3748 0.1698 0.1767 -- 86.0
X Ray Diffraction 3.6948 4.6541 -- 225 4124 0.1491 0.159 -- 94.0
X Ray Diffraction 4.6541 42.197 -- 222 4316 0.1703 0.1876 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.006
f_chiral_restr 0.088
f_angle_d 0.995
f_plane_restr 0.009
f_dihedral_angle_d 15.5
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3273
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 575

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
XSCALE data scaling
PHASER phasing