X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.9
Temperature 277.0
Details MES-BIS-TRIS Mega8-Solution DTT EDTA LiCl Methanol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.32 α = 90
b = 72.06 β = 90
c = 97.43 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M Silicon, active surface 2016-08-26
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.36 50 99.1 -- -- -- 5.52 -- 77658 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.36 1.44 98.0 -- -- 2.38 5.33 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.36 48.714 -- 1.33 -- 77648 3883 99.11 -- 0.1458 0.1443 0.1742 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3595 1.3761 -- 131 2498 0.2185 0.2506 -- 97.0
X Ray Diffraction 1.3761 1.3935 -- 137 2610 0.1988 0.2453 -- 98.0
X Ray Diffraction 1.3935 1.4119 -- 135 2560 0.1938 0.257 -- 98.0
X Ray Diffraction 1.4119 1.4312 -- 137 2605 0.1876 0.214 -- 99.0
X Ray Diffraction 1.4312 1.4516 -- 136 2574 0.1704 0.2178 -- 99.0
X Ray Diffraction 1.4516 1.4733 -- 137 2603 0.165 0.2176 -- 99.0
X Ray Diffraction 1.4733 1.4963 -- 137 2614 0.1531 0.2073 -- 99.0
X Ray Diffraction 1.4963 1.5209 -- 136 2575 0.1454 0.1939 -- 99.0
X Ray Diffraction 1.5209 1.5471 -- 138 2630 0.1428 0.1888 -- 99.0
X Ray Diffraction 1.5471 1.5752 -- 137 2603 0.1381 0.1774 -- 99.0
X Ray Diffraction 1.5752 1.6055 -- 139 2629 0.137 0.1891 -- 99.0
X Ray Diffraction 1.6055 1.6383 -- 137 2598 0.1335 0.1831 -- 99.0
X Ray Diffraction 1.6383 1.6739 -- 137 2615 0.1373 0.1745 -- 99.0
X Ray Diffraction 1.6739 1.7129 -- 139 2632 0.1329 0.1904 -- 99.0
X Ray Diffraction 1.7129 1.7557 -- 138 2628 0.1304 0.1681 -- 99.0
X Ray Diffraction 1.7557 1.8032 -- 139 2631 0.1273 0.1694 -- 99.0
X Ray Diffraction 1.8032 1.8562 -- 137 2601 0.1277 0.1726 -- 99.0
X Ray Diffraction 1.8562 1.9162 -- 139 2648 0.125 0.1675 -- 99.0
X Ray Diffraction 1.9162 1.9846 -- 140 2652 0.1321 0.1565 -- 100.0
X Ray Diffraction 1.9846 2.0641 -- 140 2664 0.1328 0.1753 -- 100.0
X Ray Diffraction 2.0641 2.158 -- 138 2637 0.1312 0.1489 -- 99.0
X Ray Diffraction 2.158 2.2718 -- 140 2647 0.1249 0.1626 -- 100.0
X Ray Diffraction 2.2718 2.4142 -- 140 2667 0.124 0.1514 -- 100.0
X Ray Diffraction 2.4142 2.6005 -- 141 2674 0.1364 0.1648 -- 100.0
X Ray Diffraction 2.6005 2.8622 -- 142 2708 0.1457 0.1678 -- 100.0
X Ray Diffraction 2.8622 3.2763 -- 142 2694 0.1496 0.1734 -- 99.0
X Ray Diffraction 3.2763 4.1275 -- 144 2731 0.1469 0.1779 -- 100.0
X Ray Diffraction 4.1275 48.7453 -- 150 2837 0.1636 0.1682 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.007
f_chiral_restr 0.079
f_plane_restr 0.006
f_dihedral_angle_d 21.844
f_angle_d 0.922
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2771
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 302

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
XDS data reduction
XDS data scaling
PHASER phasing
Coot model building