X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 400 mM NaSCN 100 mM NaAcetate pH4 12-15 % PEG4K 16 % glycerol 2 % DMSO

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 181.23 α = 90
b = 132.47 β = 102.5
c = 159.76 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS EIGER X 9M -- 2016-05-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.97 SOLEIL PROXIMA 2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.49 50 98.0 -- -- -- 2.5 -- 33576 -- -- 72.57
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.49 49.28 -- 0.0 -- 46605 2365 99.12 -- 0.2183 0.2176 0.2321 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.49 3.58 -- 148 3126 0.252 0.2926 -- 94.68
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 92.08
Anisotropic B[1][1] -14.4868
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 32.9425
Anisotropic B[2][2] -3.2691
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 17.756
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 19.62
t_angle_deg 0.97
t_omega_torsion 2.35
t_bond_d 0.009
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.486
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12655
Nucleic Acid Atoms 0
Heterogen Atoms 527
Solvent Atoms 28

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.2
XDS data reduction
Aimless data scaling
REFMAC phasing