X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 298.0
Details 112.5mM Mes pH 6.5, 35% glycerol ethoxylate, 180 mM ammonium acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 64.41 α = 90
b = 68.63 β = 90
c = 334.57 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-10-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 0.9600 Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.99 167.29 100.0 0.144 0.144 -- 6.5 -- 51653 -- -- 33.85
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.989 1.996 100.0 1.316 -- 2.2 6.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.99 167.29 -- 0.0 -- 51569 2619 99.3 -- 0.2029 0.2021 0.2185 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.99 2.04 -- 170 3321 0.2298 0.2519 0.0 99.3
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 51.09
Anisotropic B[1][1] 1.7011
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -11.3023
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 9.6012
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 2.85
t_bond_d 0.01
t_angle_deg 0.97
t_other_torsion 17.94
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.276
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5495
Nucleic Acid Atoms 0
Heterogen Atoms 56
Solvent Atoms 235

Software

Software
Software Name Purpose
Aimless data scaling version: 0.2.14
PHASER phasing
BUSTER refinement
PDB_EXTRACT data extraction version: 3.22
AutoPROC data collection
XDS data reduction version: (VERSION January 10
PHASER phasing
AutoPROC data reduction
CCP4 data scaling version: 6.4