X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.0
Details 0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 60.42 α = 90
b = 83.07 β = 94.59
c = 162 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-05-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1.00003 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.53 48.76 98.8 0.047 -- -- 6.7 -- 237243 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.53 1.67 -- 0.169 -- 1.39 6.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.53 48.76 -- 1.34 -- 236919 11863 98.62 -- 0.172 0.1706 0.1987 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5299 1.5473 -- 391 7482 0.3748 0.3868 -- 99.0
X Ray Diffraction 1.5473 1.5655 -- 419 7514 0.3557 0.4036 -- 99.0
X Ray Diffraction 1.5655 1.5846 -- 402 7483 0.3403 0.3481 -- 99.0
X Ray Diffraction 1.5846 1.6047 -- 389 7542 0.3312 0.3505 -- 99.0
X Ray Diffraction 1.6047 1.6258 -- 381 7541 0.3102 0.3411 -- 99.0
X Ray Diffraction 1.6258 1.6481 -- 417 7417 0.2939 0.3108 -- 99.0
X Ray Diffraction 1.6481 1.6716 -- 434 7368 0.2811 0.3247 -- 98.0
X Ray Diffraction 1.6716 1.6966 -- 378 7096 0.2767 0.3075 -- 94.0
X Ray Diffraction 1.6966 1.7231 -- 411 7343 0.2588 0.2971 -- 97.0
X Ray Diffraction 1.7231 1.7513 -- 410 7511 0.2372 0.2729 -- 100.0
X Ray Diffraction 1.7513 1.7815 -- 414 7534 0.2219 0.2691 -- 99.0
X Ray Diffraction 1.7815 1.8139 -- 380 7529 0.2145 0.2693 -- 99.0
X Ray Diffraction 1.8139 1.8488 -- 384 7600 0.2037 0.2278 -- 100.0
X Ray Diffraction 1.8488 1.8866 -- 387 7606 0.201 0.2387 -- 100.0
X Ray Diffraction 1.8866 1.9276 -- 387 7525 0.1918 0.2263 -- 100.0
X Ray Diffraction 1.9276 1.9724 -- 389 7561 0.1836 0.2243 -- 99.0
X Ray Diffraction 1.9724 2.0218 -- 379 7592 0.1884 0.2305 -- 99.0
X Ray Diffraction 2.0218 2.0764 -- 428 7479 0.1826 0.2162 -- 99.0
X Ray Diffraction 2.0764 2.1375 -- 354 7271 0.171 0.2041 -- 95.0
X Ray Diffraction 2.1375 2.2065 -- 398 7412 0.159 0.2039 -- 98.0
X Ray Diffraction 2.2065 2.2854 -- 397 7570 0.155 0.1909 -- 99.0
X Ray Diffraction 2.2854 2.3769 -- 409 7573 0.1596 0.1999 -- 100.0
X Ray Diffraction 2.3769 2.4851 -- 399 7574 0.1556 0.2059 -- 100.0
X Ray Diffraction 2.4851 2.6161 -- 380 7620 0.157 0.178 -- 100.0
X Ray Diffraction 2.6161 2.78 -- 379 7582 0.1623 0.2024 -- 99.0
X Ray Diffraction 2.78 2.9946 -- 395 7483 0.1726 0.1768 -- 98.0
X Ray Diffraction 2.9946 3.2959 -- 355 7435 0.1709 0.1993 -- 97.0
X Ray Diffraction 3.2959 3.7726 -- 387 7678 0.1513 0.1816 -- 99.0
X Ray Diffraction 3.7726 4.7525 -- 430 7534 0.1237 0.1498 -- 99.0
X Ray Diffraction 4.7525 48.7845 -- 400 7601 0.1523 0.1627 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.006
f_angle_d 0.838
f_plane_restr 0.005
f_dihedral_angle_d 15.017
f_chiral_restr 0.052
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12068
Nucleic Acid Atoms 0
Heterogen Atoms 57
Solvent Atoms 1246

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11_2567: ???)
XDS data reduction
XSCALE data scaling
PHASER phasing