X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.0
Details 0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 81.88 α = 95.84
b = 89.89 β = 116.53
c = 90.04 γ = 92.35
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- 2014-10-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.57 44.68 95.18 0.046 -- -- 3.4 -- 302440 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.57 1.61 94.4 0.569 -- 2.6 3.62 22310

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.57 44.682 -- 1.96 -- 302440 15124 95.18 -- 0.1606 0.1584 0.2032 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5699 1.5877 -- 533 9445 0.2496 0.3167 -- 94.0
X Ray Diffraction 1.5877 1.6064 -- 465 9626 0.232 0.2844 -- 95.0
X Ray Diffraction 1.6064 1.626 -- 534 9415 0.2296 0.2886 -- 95.0
X Ray Diffraction 1.626 1.6466 -- 537 9570 0.2238 0.2844 -- 95.0
X Ray Diffraction 1.6466 1.6683 -- 499 9518 0.2119 0.2738 -- 95.0
X Ray Diffraction 1.6683 1.6911 -- 530 9514 0.2104 0.2729 -- 95.0
X Ray Diffraction 1.6911 1.7153 -- 528 9577 0.2012 0.2783 -- 95.0
X Ray Diffraction 1.7153 1.7409 -- 473 9653 0.1946 0.2448 -- 95.0
X Ray Diffraction 1.7409 1.7681 -- 539 9600 0.1837 0.2455 -- 95.0
X Ray Diffraction 1.7681 1.7971 -- 524 9618 0.1764 0.2233 -- 96.0
X Ray Diffraction 1.7971 1.8281 -- 564 9559 0.1671 0.2205 -- 96.0
X Ray Diffraction 1.8281 1.8613 -- 463 9644 0.1688 0.2403 -- 96.0
X Ray Diffraction 1.8613 1.8971 -- 474 9655 0.171 0.2176 -- 96.0
X Ray Diffraction 1.8971 1.9358 -- 507 9675 0.163 0.2175 -- 96.0
X Ray Diffraction 1.9358 1.9779 -- 538 9659 0.1665 0.2167 -- 96.0
X Ray Diffraction 1.9779 2.0239 -- 500 9646 0.1594 0.211 -- 96.0
X Ray Diffraction 2.0239 2.0746 -- 502 9686 0.1572 0.2164 -- 96.0
X Ray Diffraction 2.0746 2.1306 -- 500 9712 0.1536 0.2066 -- 96.0
X Ray Diffraction 2.1306 2.1933 -- 472 9714 0.1485 0.1988 -- 96.0
X Ray Diffraction 2.1933 2.2641 -- 514 9646 0.1523 0.2074 -- 96.0
X Ray Diffraction 2.2641 2.3451 -- 523 9613 0.148 0.2094 -- 96.0
X Ray Diffraction 2.3451 2.4389 -- 506 9596 0.1463 0.1933 -- 95.0
X Ray Diffraction 2.4389 2.5499 -- 495 9555 0.147 0.2048 -- 95.0
X Ray Diffraction 2.5499 2.6843 -- 486 9640 0.147 0.1915 -- 96.0
X Ray Diffraction 2.6843 2.8525 -- 490 9532 0.1553 0.1967 -- 95.0
X Ray Diffraction 2.8525 3.0727 -- 477 9550 0.1638 0.2147 -- 95.0
X Ray Diffraction 3.0727 3.3818 -- 457 9525 0.1606 0.2054 -- 94.0
X Ray Diffraction 3.3818 3.8709 -- 471 9465 0.1469 0.1849 -- 94.0
X Ray Diffraction 3.8709 4.876 -- 497 9304 0.1273 0.151 -- 93.0
X Ray Diffraction 4.876 44.7005 -- 526 9404 0.1533 0.1656 -- 94.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.005
f_chiral_restr 0.034
f_dihedral_angle_d 14.643
f_angle_d 0.929
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 16064
Nucleic Acid Atoms 0
Heterogen Atoms 44
Solvent Atoms 2095

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
XDS data reduction
XSCALE data scaling
PHASER phasing